Factsheet for GSMUA_Achr9P28490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P10310_001	Banana	nucleus	52.94	42.35
CDY09431	Canola	cytosol	27.21	32.46
Bra017438.1-P	Field mustard	nucleus	38.24	31.71
KRH17355	Soybean	nucleus	40.44	31.25
PGSC0003DMT400040569	Potato	nucleus	36.76	31.25
KRH72991	Soybean	nucleus	40.44	31.25
KRH72989	Soybean	nucleus	40.44	31.25
VIT_01s0011g05360.t01	Wine grape	nucleus	41.18	30.77
KRH17357	Soybean	nucleus	39.71	30.68
CDY04096	Canola	nucleus	36.76	30.49
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.15	29.93
GSMUA_Achr6P04240_001	Banana	nucleus	37.5	29.14
KRH30939	Soybean	nucleus	38.97	28.8
GSMUA_Achr7P12540_001	Banana	cytosol	29.41	28.78
Solyc11g011160.1.1	Tomato	nucleus	33.82	28.75
KRG97935	Soybean	nucleus	38.24	28.57
Solyc04g007890.2.1	Tomato	nucleus	37.5	28.49
VIT_15s0021g02830.t01	Wine grape	nucleus	25.74	28.46
PGSC0003DMT400075917	Potato	nucleus	37.5	27.13
CDY17659	Canola	nucleus	38.97	25.85
CDY48812	Canola	cytosol	25.0	25.76
CDY36240	Canola	nucleus	38.97	25.73
Bra024870.1-P	Field mustard	nucleus	34.56	24.61
AT1G14900.1	Thale cress	nucleus	36.03	24.02
PGSC0003DMT400037815	Potato	nucleus	30.15	23.98
GSMUA_Achr5P05890_001	Banana	cytosol	41.91	21.92
Solyc05g051290.2.1	Tomato	nucleus	30.15	19.52
VIT_13s0074g00560.t01	Wine grape	plastid	30.15	19.07
VIT_15s0024g01410.t01	Wine grape	plastid	29.41	18.6
CDY09432	Canola	nucleus	25.74	18.23
VIT_09s0018g01850.t01	Wine grape	plastid	27.94	17.67
CDY48811	Canola	mitochondrion, nucleus	30.88	17.07

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSMUA_Achr9G28490_001	EnsemblPlants:GSMUA_Achr9P28490_001
EnsemblPlants:GSMUA_Achr9T28490_001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	UniProt:M0U4A6
PFAM:PF00538	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF49	SMART:SM00526	SUPFAM:SSF46785
UniParc:UPI000295E919	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G28490_001]

Coordinates

chr9:-:32465242..32465801

Molecular Weight (calculated)

14439.9 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.774

Length

136 amino acids

Sequence
(BLAST)

001: MATEEEDPRT HSLPPYPQMI LAAVAASGDK DGTSMSAIAE YVESSYEGQL PPSHASQLDA HLARMTEAGE LLLVGSGYFR PGPEAPPPVK RRRGRPPKPK
101: LPDPAGPADA APRRPRRRWS GSGSAGFDQE TEGPAA

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.