Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36240 | Canola | nucleus | 95.61 | 95.15 |
| Bra024870.1-P | Field mustard | nucleus | 81.46 | 87.43 |
| CDY09431 | Canola | cytosol | 35.12 | 63.16 |
| CDY04096 | Canola | nucleus | 49.27 | 61.59 |
| AT1G14900.1 | Thale cress | nucleus | 60.0 | 60.29 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 49.27 | 55.49 |
| CDY48812 | Canola | cytosol | 34.15 | 53.03 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 40.49 | 51.55 |
| Solyc04g007890.2.1 | Tomato | nucleus | 44.88 | 51.4 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 38.54 | 49.07 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 41.46 | 48.57 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 40.49 | 47.98 |
| CDY09432 | Canola | nucleus | 44.39 | 47.4 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 28.29 | 47.15 |
| Os08t0428800-00 | Rice | nucleus | 40.49 | 46.63 |
| PGSC0003DMT400075917 | Potato | nucleus | 42.44 | 46.28 |
| Zm00001d050368_P001 | Maize | nucleus | 40.49 | 45.36 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 19.51 | 44.94 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 40.0 | 44.57 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 40.49 | 43.92 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.27 | 43.8 |
| Zm00001d032239_P001 | Maize | plastid | 40.98 | 43.52 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 28.78 | 43.07 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 39.02 | 42.33 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 39.02 | 42.33 |
| EES15017 | Sorghum | nucleus | 39.51 | 40.91 |
| Os09t0402100-01 | Rice | nucleus | 42.44 | 40.85 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 27.32 | 40.29 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 41.46 | 39.53 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 25.85 | 38.97 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 32.2 | 38.82 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 40.49 | 38.6 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 38.05 | 36.28 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 42.93 | 33.85 |
| CDY48811 | Canola | mitochondrion, nucleus | 38.54 | 32.11 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 23.9 | 31.21 |
| Zm00001d020412_P001 | Maize | cytosol | 38.54 | 25.73 |
| EER98875 | Sorghum | nucleus | 39.51 | 24.92 |
| CDY67892 | Canola | nucleus | 25.37 | 17.81 |
| CDX93685 | Canola | nucleus | 34.15 | 17.07 |
| CDX95791 | Canola | nucleus | 26.83 | 16.98 |
| CDY40600 | Canola | nucleus | 33.17 | 15.28 |
| CDY04315 | Canola | nucleus, plastid | 31.71 | 14.38 |
| CDX95794 | Canola | nucleus | 27.8 | 13.48 |
| CDY18486 | Canola | nucleus | 30.73 | 13.29 |
| CDX95560 | Canola | plastid | 31.71 | 13.21 |
| CDX92189 | Canola | nucleus | 23.9 | 11.45 |
| CDX92188 | Canola | nucleus | 27.8 | 11.38 |
| CDY59682 | Canola | nucleus, plastid | 31.71 | 10.82 |
| CDY51930 | Canola | nucleus | 28.78 | 9.55 |
| CDX75957 | Canola | nucleus | 27.8 | 9.25 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | GO:A0A078FX05 | UniProt:A0A078FX05 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY17659 |
| ProteinID:CDY17659 | ProteinID:CDY17659.1 | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00001874001 | InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 | PRINTS:PR00930 |
| PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 |
| UniParc:UPI0004EE8090 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BnaA06g34780DBnaA06g34780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX05]
Coordinates
chrLK032076:-:410403..411480
Molecular Weight (calculated)
21927.2 Da
IEP (calculated)
10.410
GRAVY (calculated)
-0.982
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETELEPQ QSPMAEEQQP SPFSLPPYPQ MIMEAIEASN DANGCNKTAI AKHIESTQTS LPPSHMTLLS YHLNQMKQSG QIAMVKNNYM KPDPQAPPKR
101: GRGRPPKAKP QGESSHVAVP APAPSVSSPR PRGRPPKAKD PSSEVETKVA APSGSGRPRG RPPKKQKTES EAVKADVEPA EAPAGERRGR GRPPKAKPAM
201: VPVGC
101: GRGRPPKAKP QGESSHVAVP APAPSVSSPR PRGRPPKAKD PSSEVETKVA APSGSGRPRG RPPKKQKTES EAVKADVEPA EAPAGERRGR GRPPKAKPAM
201: VPVGC
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.