CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032258.1-P	Field mustard	nucleus, plastid	97.5	97.18
CDY04315	Canola	nucleus, plastid	54.24	72.12
CDX93685	Canola	nucleus	35.44	51.95
CDY40600	Canola	nucleus	36.77	49.66
AT1G48620.1	Thale cress	nucleus	35.27	44.26
CDX95560	Canola	plastid	28.62	34.96
CDY18486	Canola	nucleus	26.79	33.97
KRH72147	Soybean	cytosol	8.65	33.77
KRG88430	Soybean	nucleus	12.98	32.5
CDY04096	Canola	nucleus	8.82	32.32
CDY17659	Canola	nucleus	10.82	31.71
KRG94697	Soybean	cytosol	9.48	31.67
CDY09431	Canola	cytosol	5.99	31.58
KRH60528	Soybean	nucleus	19.97	31.33
CDY36240	Canola	nucleus	10.65	31.07
VIT_17s0000g02550.t01	Wine grape	nucleus	18.3	30.99
KRH41804	Soybean	nucleus	20.63	30.02
CDY48812	Canola	cytosol	6.16	28.03
KRH39095	Soybean	nucleus	20.97	25.35
CDX75957	Canola	nucleus	24.13	23.54
CDY09432	Canola	nucleus	7.32	22.92
CDY67892	Canola	nucleus	10.82	22.26
CDX92189	Canola	nucleus	15.14	21.26
CDX95794	Canola	nucleus	14.81	21.04
CDX95791	Canola	nucleus	11.31	20.99
PGSC0003DMT400014700	Potato	extracellular, nucleus	18.3	20.87
CDX92188	Canola	nucleus	17.3	20.76
Solyc03g119130.2.1	Tomato	nucleus	16.64	19.3
CDY51930	Canola	nucleus	19.63	19.09
CDY48811	Canola	mitochondrion, nucleus	7.49	18.29

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078J241	UniProt:A0A078J241	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDY59682
ProteinID:CDY59682	ProteinID:CDY59682.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00027593001	InterPro:HMGA_plant
InterPro:Histone_H1/H5_H15	InterPro:Histone_H5	InterPro:IPR005818	InterPro:IPR036388	PFAM:PF00538	PRINTS:PR00624
PRINTS:PR00929	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00384	SMART:SM00526
SUPFAM:SSF46785	UniParc:UPI0004EDCE1E	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

BnaA05g36480DBnaA05g36480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J241]

Coordinates

chrLK033795:+:30329..36241

Molecular Weight (calculated)

64404.6 Da

IEP (calculated)

11.217

GRAVY (calculated)

-0.892

Length

601 amino acids

Sequence
(BLAST)

001: MDPSLPPPPF TAFPPFTNSN SNPFPPPQHP FSSAVAQANN NQFFQPSPPV PCHPSVNHPH YSEMICSAIS ALNEPDGSSK QAISRYIERF YTGIPPAHGS
101: LLTHHLRTLK NSGVLVMVKK SYKLAAAALE PPRSGFNETQ QLPDPAATSA PQTQTQTQKR GRGRPPKSKP TLEQNQLVVS EQMQAQPPPV KRPPGRPRKD
201: GALPTVKASV PGGEEITKRR GRPPSGRAAG RERKPAVVSA PVSVFPYVAN GGVRRRGRPK RTDAGASSVA PPPKAEGGGE QVAKRGRGRP PKIGGVIRKA
301: MKPKRGYFRT GRPRKNAASK GASGQQDISF GELKKKFELF QEKAKEIVNV LKAEVGGSDN QAVVQAIHDL EELTVTKRET AEEPRYMEDV QPDELYFENE
401: PQPDGHGQGQ VKQTRFLMAK TARTPSASHG TGPEAPRSDA AGSPAATDSQ KRGRGRPPKS KSDSQDGAVS AAQPARKPSG RPKRNLATAA VATAPAAAGR
501: PRRSNTVRAT EPQVTAGDGS RKRGRPKKDD VAAPAKKQRG RKPKSEPVAK KTVGRPKNGA SDPRELKKKA ALLQKKVKQA ADKLKIAVSA IEEVQEIAAG
601: M

Best Arabidopsis Sequence Match ( AT1G48620.1 )
(BLAST)

001: MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI
101: SRYIERIYTG IPTAHGALLT HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS TPQTIKRGRG RPPKAKPDVV
201: QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV
301: ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF
401: ELFQARAKDI VIVLKSEIGG SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF

Arabidopsis Description

HON5At1g48620 [Source:UniProtKB/TrEMBL;Acc:Q4V3D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.