CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022274.1-P	Field mustard	nucleus	91.12	87.25
CDX95791	Canola	nucleus	62.62	82.72
CDY67892	Canola	nucleus	47.43	69.52
CDX95794	Canola	nucleus	40.42	40.9
CDX92188	Canola	nucleus	43.22	36.93
CDY09431	Canola	cytosol	7.24	27.19
CDY04096	Canola	nucleus	10.05	26.22
CDY18486	Canola	nucleus	28.74	25.95
CDX95560	Canola	plastid	28.5	24.8
CDY48812	Canola	cytosol	7.48	24.24
CDY17659	Canola	nucleus	11.45	23.9
KRG94697	Soybean	cytosol	10.05	23.89
CDY36240	Canola	nucleus	11.45	23.79
CDX93685	Canola	nucleus	21.96	22.93
KRH72147	Soybean	cytosol	7.94	22.08
KRG88430	Soybean	nucleus	11.92	21.25
CDY40600	Canola	nucleus	21.73	20.9
KRH60528	Soybean	nucleus	18.69	20.89
VIT_17s0000g02550.t01	Wine grape	nucleus	17.29	20.85
CDY04315	Canola	nucleus, plastid	21.73	20.58
CDY09432	Canola	nucleus	8.64	19.27
CDY51930	Canola	nucleus	26.87	18.61
KRH41804	Soybean	nucleus	17.06	17.68
CDX75957	Canola	nucleus	24.77	17.21
CDY48811	Canola	mitochondrion, nucleus	9.58	16.67
KRH39095	Soybean	nucleus	18.22	15.69
CDY59682	Canola	nucleus, plastid	21.26	15.14
Solyc03g119130.2.1	Tomato	nucleus	17.06	14.09
PGSC0003DMT400014700	Potato	extracellular, nucleus	16.59	13.47

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078DUQ7	EnsemblPlants:CDX92189	ProteinID:CDX92189	ProteinID:CDX92189.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00153895001	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	PFAM:PF00538
PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF33	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0004EEE9CD
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaA05g22180D

Coordinates

chrLK031871:-:709260..711102

Molecular Weight (calculated)

46844.7 Da

IEP (calculated)

6.126

GRAVY (calculated)

-0.536

Length

428 amino acids

Sequence
(BLAST)

001: MDPNHPSNAS FVPDHVTPPN QPVHHVRPIN LSNNVYSHPE FQPQPQFQPR AQFMPQPQQQ TPPSRLALVP TQAQPSINYP PYDDMIFDAI RDLNEPDGSS
101: KTRISRRIKR SNAVLPPSYA VLMTYHLKTL RKNGVLTMVN NLYKISAAAP PPRQGVAVAA DLVAPRYEVP PMNSSPLDML GQSSRELPEL PVTGPNQVVI
201: ESANRRLDRP RRDGSVPISP TAGAILGFPY PSTYASMLQR GRPPSPRAAV SERKRLCIGE SSGGVVIAAP AGGETVAVAS RMWRGPGCTP NIVWNRPRES
301: ATPMSIRAAT GTSESAYGEL KRKLDFACEK AKKILDVLNA GIENYDFIEM LQARQEVEGL IPMLTVEPHA MRQVQPQAME EVEALPVEQP QAVEEGPSEE
401: AAAQTEAETQ GEEHGQEVVE GEQAQPQP

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.