CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67892	Canola	nucleus	37.59	54.45
CDX95791	Canola	nucleus	39.95	52.16
CDX92188	Canola	nucleus	52.01	43.91
CDX92189	Canola	nucleus	40.9	40.42
CDY09431	Canola	cytosol	7.8	28.95
CDY04096	Canola	nucleus	10.87	28.05
CDY17659	Canola	nucleus	13.48	27.8
CDY36240	Canola	nucleus	13.48	27.67
CDY48812	Canola	cytosol	8.27	26.52
KRG88430	Soybean	nucleus	14.42	25.42
CDX95560	Canola	plastid	27.66	23.78
VIT_17s0000g02550.t01	Wine grape	nucleus	19.39	23.1
KRH72147	Soybean	cytosol	8.27	22.73
CDY18486	Canola	nucleus	25.3	22.57
KRG94697	Soybean	cytosol	9.46	22.22
CDY09432	Canola	nucleus	9.93	21.88
CDY40600	Canola	nucleus	22.7	21.57
CDX93685	Canola	nucleus	20.57	21.22
CDY04315	Canola	nucleus, plastid	21.75	20.35
KRH60528	Soybean	nucleus	17.26	19.06
KRH41804	Soybean	nucleus	17.73	18.16
CDY48811	Canola	mitochondrion, nucleus	10.4	17.89
CDX75957	Canola	nucleus	24.35	16.72
CDY51930	Canola	nucleus	23.88	16.34
CDY59682	Canola	nucleus, plastid	21.04	14.81
KRH39095	Soybean	nucleus	17.26	14.69
Solyc03g119130.2.1	Tomato	nucleus	17.73	14.48
PGSC0003DMT400014700	Potato	extracellular, nucleus	17.73	14.23

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.2	GO:A0A078E5E2	EnsemblPlants:CDX95794	ProteinID:CDX95794	ProteinID:CDX95794.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00101729001	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388
PFAM:PF00538	PFscan:PS51504	PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00526	SUPFAM:SSF46785
UniParc:UPI0004EE62DD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC05g35450D

Coordinates

chrLK031891:+:295960..299240

Molecular Weight (calculated)

46203.3 Da

IEP (calculated)

11.059

GRAVY (calculated)

-0.705

Length

423 amino acids

Sequence
(BLAST)

001: MDPNHPSNTS FVPGHVTPPN QPVLHVTPIN GSNNVYSHPD FQPQPHFQPR PQFQPMPQFQ PRPQFQPHPQ FMLRPQFMPQ PQPPLQQTPP SRLAHVPTQA
101: QPLINYPPYD DMICDVIRDL NEPDGSSKSR ISRRIKRSNV VLPPSHSVLM TYHLKRLRKN GVLTMVNNLY KIAAAPPPPP PPPPPPPPPQ NVAVAADLEL
201: EAPRSEVPPM NTSPLDMLAA SASGLALGSQ PQKRGRGRPP KANPEAPQEQ QPIDAQPVAV MSPGQSSREQ PELHVADSNQ VVTESANRRP DWPRRGRSVP
301: ISPTAGAVLA LPAPSTYARG RSPSRSDAGR ERKRLCIGAS SGGVVIAAPA GGETVAVASR MMRGPGRPRK VVRGRPKKST IPISTREATG TLESSHGELK
401: RKLDFAPYYL QTKYGVKTIS SWN

Best Arabidopsis Sequence Match ( AT3G18035.1 )
(BLAST)

001: MDPSLGDPHH PPQFTPFPHF PTSNHHPLGP NPYNNHVVFQ PQPQTQTQIP QPQMFQLSPH VSMPHPPYSE MICAAIAALN EPDGSSKMAI SRYIERCYTG
101: LTSAHAALLT HHLKTLKTSG VLSMVKKSYK IAGSSTPPAS VAVAAAAAAQ GLDVPRSEIL HSSNNDPMAS GSASQPLKRG RGRPPKPKPE SQPQPLQQLP
201: PTNQVQANGQ PIWEQQQVQS PVPVPTPVTE SAKRGPGRPR KNGSAAPATA PIVQASVMAG IMKRRGRPPG RRAAGRQRKP KSVSSTASVY PYVANGARRR
301: GRPRRVVDPS SIVSVAPVGG ENVAAVAPGM KRGRGRPPKI GGVISRLIMK PKRGRGRPVG RPRKIGTSVT TGTQDSGELK KKFDIFQEKV KEIVKVLKDG
401: VTSENQAVVQ AIKDLEALTV TETVEPQVME EVQPEETAAP QTEAQQTEAA ETQGGQEEGQ EREGETQTQT EAEAMQEALF

Arabidopsis Description

HON4At3g18035 [Source:UniProtKB/TrEMBL;Acc:Q9LSK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.