Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G211400.1 | Wheat | nucleus | 86.41 | 84.13 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 85.33 | 83.07 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 84.24 | 82.01 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 48.91 | 51.43 |
| Os09t0402100-01 | Rice | nucleus | 57.61 | 49.77 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 36.96 | 49.63 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 47.83 | 48.35 |
| KRH17357 | Soybean | nucleus | 46.2 | 48.3 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.87 | 48.18 |
| KRH72991 | Soybean | nucleus | 45.65 | 47.73 |
| KRH17355 | Soybean | nucleus | 45.11 | 47.16 |
| KRH72989 | Soybean | nucleus | 45.11 | 47.16 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 35.33 | 46.76 |
| KRH30939 | Soybean | nucleus | 45.11 | 45.11 |
| KRG97935 | Soybean | nucleus | 43.48 | 43.96 |
| Solyc11g011160.1.1 | Tomato | nucleus | 37.5 | 43.12 |
| PGSC0003DMT400040569 | Potato | nucleus | 36.96 | 42.5 |
| Bra017438.1-P | Field mustard | nucleus | 37.5 | 42.07 |
| Solyc04g007890.2.1 | Tomato | nucleus | 39.67 | 40.78 |
| CDY17659 | Canola | nucleus | 44.57 | 40.0 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 26.63 | 39.84 |
| Bra024870.1-P | Field mustard | nucleus | 41.3 | 39.79 |
| PGSC0003DMT400075917 | Potato | nucleus | 40.22 | 39.36 |
| CDY36240 | Canola | nucleus | 43.48 | 38.84 |
| CDY04096 | Canola | nucleus | 34.24 | 38.41 |
| PGSC0003DMT400037815 | Potato | nucleus | 35.33 | 38.01 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 52.72 | 37.31 |
| AT1G14900.1 | Thale cress | nucleus | 40.22 | 36.27 |
| CDY09431 | Canola | cytosol | 22.28 | 35.96 |
| Solyc05g051290.2.1 | Tomato | nucleus | 36.96 | 32.38 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 35.33 | 30.23 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 34.78 | 29.77 |
| Zm00001d020412_P001 | Maize | cytosol | 48.91 | 29.32 |
| CDY48812 | Canola | cytosol | 20.65 | 28.79 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 32.07 | 27.44 |
| EER98875 | Sorghum | nucleus | 48.37 | 27.38 |
| CDY09432 | Canola | nucleus | 27.17 | 26.04 |
| CDY48811 | Canola | mitochondrion, nucleus | 26.63 | 19.92 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | EMBL:AK365944 | InterPro:AT_hook_DNA-bd_motif | UniProt:F2DPX6 | GO:GO:0000785 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA |
| InterPro:HMGI/Y_DNA-bd_CS | EnsemblPlantsGene:HORVU5Hr1G060800 | EnsemblPlants:HORVU5Hr1G060800.2 | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 |
| PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 | PRINTS:PR00930 | ScanProsite:PS00354 | PFscan:PS51504 |
| PANTHER:PTHR11467 | PANTHER:PTHR11467:SF85 | SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0002006C7A |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DPX6]
Coordinates
chrchr5H:+:475887520..475889544
Molecular Weight (calculated)
18967.8 Da
IEP (calculated)
10.971
GRAVY (calculated)
-0.776
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEGSPKSG DIPPYPEMIL AAIEALGDTN GSNKSAISSY IEEKYEGLPS AHASLLTANL ASMKEAGKLA FVKNNYLKAD AVSATPAKRG RGRPPKDPNA
101: PPKPKPDPNT PKRGRGRPPK DPMSVAVKEA VAKATTGMPK GRGRPPGPSA AKKAKVTKEA ESPAAASGSA PAKRGRGRPR KVAA
101: PPKPKPDPNT PKRGRGRPPK DPMSVAVKEA VAKATTGMPK GRGRPPGPSA AKKAKVTKEA ESPAAASGSA PAKRGRGRPR KVAA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.