Factsheet for VIT_15s0024g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01850.t01	Wine grape	plastid	97.67	97.67
VIT_13s0074g00560.t01	Wine grape	plastid	90.7	90.7
VIT_15s0021g02830.t01	Wine grape	nucleus	47.91	83.74
VIT_01s0011g05360.t01	Wine grape	nucleus	64.65	76.37
TraesCS5D01G400300.1	Wheat	nucleus	33.95	45.34
Solyc04g007890.2.1	Tomato	nucleus	37.21	44.69
TraesCS5B01G395400.1	Wheat	nucleus	32.56	43.48
Zm00001d050368_P001	Maize	nucleus	35.81	42.08
GSMUA_Achr6P04240_001	Banana	nucleus	33.95	41.71
AT1G14900.1	Thale cress	nucleus	39.53	41.67
TraesCS5A01G390500.1	Wheat	nucleus	33.49	41.62
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	17.21	41.57
Bra017438.1-P	Field mustard	nucleus	31.63	41.46
CDY17659	Canola	nucleus	39.53	41.46
Bra024870.1-P	Field mustard	nucleus	36.74	41.36
PGSC0003DMT400075917	Potato	nucleus	35.81	40.96
CDY36240	Canola	nucleus	39.07	40.78
Os08t0428800-00	Rice	nucleus	33.49	40.45
CDY04096	Canola	nucleus	30.7	40.24
Zm00001d032239_P001	Maize	plastid	34.42	38.34
HORVU5Hr1G095410.1	Barley	nucleus	24.19	37.96
CDY09431	Canola	cytosol	20.0	37.72
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.72	37.23
TraesCS5D01G211400.1	Wheat	nucleus	32.56	37.04
TraesCS5A01G204700.1	Wheat	nucleus	32.09	36.51
EES15017	Sorghum	nucleus	33.49	36.36
TraesCS5B01G203600.1	Wheat	nucleus	31.16	35.45
HORVU5Hr1G060800.2	Barley	nucleus	30.23	35.33
GSMUA_Achr7P12540_001	Banana	cytosol	22.79	35.25
GSMUA_Achr7P10310_001	Banana	nucleus	27.44	34.71
Os09t0402100-01	Rice	nucleus	33.02	33.33
CDY48812	Canola	cytosol	19.53	31.82
CDY09432	Canola	nucleus	27.44	30.73
GSMUA_Achr9P28490_001	Banana	nucleus	18.6	29.41
GSMUA_Achr5P05890_001	Banana	cytosol	34.42	28.46
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	20.0	27.39
CDY48811	Canola	mitochondrion, nucleus	23.72	20.73
EER98875	Sorghum	nucleus	28.84	19.08
VIT_17s0000g02550.t01	Wine grape	nucleus	31.16	18.87
Zm00001d020412_P001	Maize	cytosol	26.05	18.24

Protein Annotations

EntrezGene:100243851	wikigene:100243851	EntrezGene:100261585	wikigene:100261585	MapMan:35.2	EMBL:AM463533
InterPro:AT_hook_DNA-bd_motif	ProteinID:CAN79065	ProteinID:CAN79065.1	ProteinID:CCB62148	ProteinID:CCB62148.1	UniProt:F6I5D0
EMBL:FN596748	GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006334	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	InterPro:HMGA	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	EntrezGene:LOC100243851
wikigene:LOC100243851	EntrezGene:LOC100261585	wikigene:LOC100261585	PRINTS:PR00929	PRINTS:PR00930	PFscan:PS51504
PANTHER:PTHR11467	PANTHER:PTHR11467:SF29	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI0001983833	ArrayExpress:VIT_15s0024g01410
EnsemblPlantsGene:VIT_15s0024g01410	EnsemblPlants:VIT_15s0024g01410.t01	InterPro:WH_DNA-bd_sf	RefSeq:XP_002266360	RefSeq:XP_002266360.1	RefSeq:XP_002276033
RefSeq:XP_002276033.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:+:2815910..2816557

Molecular Weight (calculated)

23351.5 Da

IEP (calculated)

11.873

GRAVY (calculated)

-0.693

Length

215 amino acids

Sequence
(BLAST)

001: MTVILAHPPP PFSLRHAMHP KPSRFSMAMH GHFLPIPQPP SSILQHLETT MAAIEALNDK SGSSKSFISK HIESAHGDLP AAHSTLLMHH LNRRKQNGDP
101: VMVRNHCMKP DPNAPPRKGR GRPPEPEFPL PPGTVLAPPR PRCHPLKPRD PFALVSPPKK ASSGSGKPRG RPPEKPKVGT SSAPAPATGA SRPRGWPPKA
201: KPAVVPVGWR FKQRC

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.