Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020412_P001 | Maize | cytosol | 65.85 | 69.71 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 14.46 | 52.81 |
| Os09t0402100-01 | Rice | nucleus | 32.92 | 50.23 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 27.38 | 48.37 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 27.69 | 47.62 |
| EES15017 | Sorghum | nucleus | 28.31 | 46.46 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 24.62 | 45.71 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 26.46 | 45.5 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 25.23 | 45.05 |
| KRH17357 | Soybean | nucleus | 24.31 | 44.89 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.77 | 44.53 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 25.85 | 44.44 |
| KRH72991 | Soybean | nucleus | 24.0 | 44.32 |
| Solyc11g011160.1.1 | Tomato | nucleus | 21.23 | 43.12 |
| KRH72989 | Soybean | nucleus | 23.08 | 42.61 |
| KRH17355 | Soybean | nucleus | 23.08 | 42.61 |
| PGSC0003DMT400040569 | Potato | nucleus | 20.92 | 42.5 |
| PGSC0003DMT400075917 | Potato | nucleus | 23.38 | 40.43 |
| Solyc04g007890.2.1 | Tomato | nucleus | 22.15 | 40.22 |
| KRH30939 | Soybean | nucleus | 22.77 | 40.22 |
| CDY17659 | Canola | nucleus | 24.92 | 39.51 |
| KRG97935 | Soybean | nucleus | 21.85 | 39.01 |
| CDY36240 | Canola | nucleus | 24.62 | 38.84 |
| Bra024870.1-P | Field mustard | nucleus | 22.77 | 38.74 |
| PGSC0003DMT400037815 | Potato | nucleus | 19.69 | 37.43 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 15.69 | 36.69 |
| Bra017438.1-P | Field mustard | nucleus | 18.46 | 36.59 |
| CDY09431 | Canola | cytosol | 12.62 | 35.96 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 13.54 | 35.77 |
| CDY04096 | Canola | nucleus | 17.85 | 35.37 |
| AT1G14900.1 | Thale cress | nucleus | 21.85 | 34.8 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 26.15 | 32.69 |
| Solyc05g051290.2.1 | Tomato | nucleus | 20.62 | 31.9 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 14.15 | 29.3 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 19.08 | 28.84 |
| CDY09432 | Canola | nucleus | 16.92 | 28.65 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 18.46 | 27.91 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 17.85 | 26.98 |
| CDY48812 | Canola | cytosol | 10.46 | 25.76 |
| CDY48811 | Canola | mitochondrion, nucleus | 13.54 | 17.89 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.2 | EntrezGene:8056239 | InterPro:AT_hook_DNA-bd_motif | UniProt:C5XC59 | EnsemblPlants:EER98875 |
| ProteinID:EER98875 | ProteinID:EER98875.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 |
| InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 |
| PANTHER:PTHR11467:SF29 | SMART:SM00384 | SMART:SM00526 | EnsemblPlantsGene:SORBI_3002G196500 | SUPFAM:SSF46785 | unigene:Sbi.3161 |
| UniParc:UPI0001A83F61 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | RefSeq:XP_002462354.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:58552079..58553596
Molecular Weight (calculated)
33589.6 Da
IEP (calculated)
5.881
GRAVY (calculated)
-0.508
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEDGAAPP PPPPPLPSYP EMIVEAIRAL GLEVSSNKTA ISDYIRGRYG SSLPAQHNAF LTGHLARMKA TGELAFLRNN YLVPDDKVEE EEEEASPLPT
101: DGHKDPAAAA AEDSIDMFDP NSFFFDFEDD GLLAPPIVMD ADADDIAVPD PAPVITADVN PVPTKRGRGR PPKPKDPVAE GSSGEPAAAP VVSADAAAMP
201: VKRGRGRPPK PKNPVAEDAA PTAASVVSAD ANAVPVKRGR GRPPKPKDTI TVATDRATSG MLSPRGRGRG RGRPPKKAKV AVEDPSGEPA AAPGVAADAS
301: AVPVKRGRGR PPKVRPAVVG APSES
101: DGHKDPAAAA AEDSIDMFDP NSFFFDFEDD GLLAPPIVMD ADADDIAVPD PAPVITADVN PVPTKRGRGR PPKPKDPVAE GSSGEPAAAP VVSADAAAMP
201: VKRGRGRPPK PKNPVAEDAA PTAASVVSAD ANAVPVKRGR GRPPKPKDTI TVATDRATSG MLSPRGRGRG RGRPPKKAKV AVEDPSGEPA AAPGVAADAS
301: AVPVKRGRGR PPKVRPAVVG APSES
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.