Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G211400.1 | Wheat | nucleus | 90.48 | 90.48 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 88.89 | 88.89 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 83.07 | 85.33 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 49.74 | 58.39 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 47.62 | 51.43 |
| KRH72991 | Soybean | nucleus | 44.44 | 47.73 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 45.5 | 47.25 |
| KRH17357 | Soybean | nucleus | 43.92 | 47.16 |
| KRH17355 | Soybean | nucleus | 43.92 | 47.16 |
| KRH72989 | Soybean | nucleus | 43.92 | 47.16 |
| Os09t0402100-01 | Rice | nucleus | 52.91 | 46.95 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.86 | 46.72 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 33.33 | 45.32 |
| KRH30939 | Soybean | nucleus | 43.39 | 44.57 |
| KRG97935 | Soybean | nucleus | 42.86 | 44.51 |
| Solyc11g011160.1.1 | Tomato | nucleus | 37.04 | 43.75 |
| PGSC0003DMT400040569 | Potato | nucleus | 36.51 | 43.12 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 27.51 | 42.28 |
| Bra017438.1-P | Field mustard | nucleus | 34.92 | 40.24 |
| Solyc04g007890.2.1 | Tomato | nucleus | 37.57 | 39.66 |
| CDY17659 | Canola | nucleus | 42.33 | 39.02 |
| CDY36240 | Canola | nucleus | 41.27 | 37.86 |
| PGSC0003DMT400075917 | Potato | nucleus | 37.57 | 37.77 |
| AT1G14900.1 | Thale cress | nucleus | 40.74 | 37.75 |
| Bra024870.1-P | Field mustard | nucleus | 38.1 | 37.7 |
| CDY04096 | Canola | nucleus | 32.28 | 37.2 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 50.26 | 36.54 |
| PGSC0003DMT400037815 | Potato | nucleus | 32.8 | 36.26 |
| CDY09431 | Canola | cytosol | 21.69 | 35.96 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 35.45 | 31.16 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 34.92 | 30.7 |
| Solyc05g051290.2.1 | Tomato | nucleus | 33.86 | 30.48 |
| CDY48812 | Canola | cytosol | 20.63 | 29.55 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 31.75 | 27.91 |
| Zm00001d020412_P001 | Maize | cytosol | 44.97 | 27.69 |
| CDY09432 | Canola | nucleus | 26.98 | 26.56 |
| EER98875 | Sorghum | nucleus | 44.44 | 25.85 |
| CDY48811 | Canola | mitochondrion, nucleus | 25.4 | 19.51 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | ncoils:Coil | GO:GO:0000785 | GO:GO:0000786 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HMGA | InterPro:HMGI/Y_DNA-bd_CS |
| InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | PFAM:PF00538 | PFAM:PF02178 | PRINTS:PR00929 |
| PRINTS:PR00930 | ScanProsite:PS00354 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF85 | SMART:SM00384 |
| SMART:SM00526 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS5B01G203600 | EnsemblPlants:TraesCS5B01G203600.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:370450185..370451292
Molecular Weight (calculated)
19323.1 Da
IEP (calculated)
11.141
GRAVY (calculated)
-0.825
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MANGGSPKSG DIPPYPEMIL AAIEALGDKN GSSKSAISSY IEEKYEGLPS AHASLLTANL ASMKEAGKLA FAKNNYLKAD APSATPAKRG RGRPPKDPNA
101: PPKPKAAPKD PNTPKRGRGR PPKAKDSMAD AVKEAVAKAT TGMPRGRGRP PGPSSAKKAK VTTEAASPAP ASGSAPAKRG RGRPRKVAA
101: PPKPKAAPKD PNTPKRGRGR PPKAKDSMAD AVKEAVAKAT TGMPRGRGRP PGPSSAKKAK VTTEAASPAP ASGSAPAKRG RGRPRKVAA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.