Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g051290.2.1 | Tomato | nucleus | 87.13 | 70.95 |
| PGSC0003DMT400040569 | Potato | nucleus | 58.48 | 62.5 |
| KRH72991 | Soybean | nucleus | 48.54 | 47.16 |
| KRH17357 | Soybean | nucleus | 48.54 | 47.16 |
| KRH72989 | Soybean | nucleus | 46.78 | 45.45 |
| KRH17355 | Soybean | nucleus | 46.2 | 44.89 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 42.11 | 44.72 |
| KRG97935 | Soybean | nucleus | 46.2 | 43.41 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 39.77 | 42.24 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 42.69 | 42.2 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 21.64 | 41.57 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 32.75 | 40.88 |
| KRH30939 | Soybean | nucleus | 43.86 | 40.76 |
| Os08t0428800-00 | Rice | nucleus | 42.11 | 40.45 |
| PGSC0003DMT400075917 | Potato | nucleus | 44.44 | 40.43 |
| GSMUA_Achr6P04240_001 | Banana | nucleus | 39.77 | 38.86 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 31.58 | 38.85 |
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.99 | 38.69 |
| Zm00001d032239_P001 | Maize | plastid | 42.69 | 37.82 |
| Zm00001d050368_P001 | Maize | nucleus | 40.35 | 37.7 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 38.01 | 35.33 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 34.5 | 34.71 |
| EES15017 | Sorghum | nucleus | 39.77 | 34.34 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 36.84 | 33.33 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 36.26 | 32.8 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 36.26 | 32.8 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 23.98 | 30.15 |
| Os09t0402100-01 | Rice | nucleus | 37.43 | 30.05 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 43.86 | 28.85 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 25.73 | 28.03 |
| EER98875 | Sorghum | nucleus | 37.43 | 19.69 |
| Zm00001d020412_P001 | Maize | cytosol | 35.09 | 19.54 |
| PGSC0003DMT400014700 | Potato | extracellular, nucleus | 29.24 | 9.49 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:102597480 | MapMan:35.2 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | UniProt:M1B5Y3 | PFAM:PF00538 |
| EnsemblPlantsGene:PGSC0003DMG400014590 | PGSC:PGSC0003DMG400014590 | EnsemblPlants:PGSC0003DMT400037815 | PRINTS:PR00929 | PFscan:PS51504 | PANTHER:PTHR11467 |
| PANTHER:PTHR11467:SF49 | SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI000295395C | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | RefSeq:XP_006360387.1 | SEG:seg | : | : | : |
Description
High mobility group protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014590]
Coordinates
chr5:-:45950200..45951805
Molecular Weight (calculated)
18716.1 Da
IEP (calculated)
9.944
GRAVY (calculated)
-1.177
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQSFNQFP SYPEMIYEAL DELNQEGGAN KSSITKYIET KYGDLNEDLS KMLPLHLDNM KQNGNLVFLK NNYMKPGPDV PAKRGRGRPP KPKAPLPPGA
101: VESVESAPPK PRGRPRKDPN APPTSKKPKP APVPGGPNST DLGSTTGRPR GRPRKVRPQP AHDDDDDVEE S
101: VESVESAPPK PRGRPRKDPN APPTSKKPKP APVPGGPNST DLGSTTGRPR GRPRKVRPQP AHDDDDDVEE S
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.