Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P24470_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.86 | 70.07 |
| Os08t0428800-00 | Rice | nucleus | 60.57 | 59.55 |
| Zm00001d050368_P001 | Maize | nucleus | 61.71 | 59.02 |
| TraesCS5D01G400300.1 | Wheat | nucleus | 53.71 | 58.39 |
| OQU80556 | Sorghum | cytoskeleton, cytosol, nucleus | 29.14 | 57.3 |
| TraesCS5B01G395400.1 | Wheat | nucleus | 52.0 | 56.52 |
| Zm00001d032239_P001 | Maize | plastid | 62.29 | 56.48 |
| TraesCS5A01G390500.1 | Wheat | nucleus | 53.71 | 54.34 |
| GSMUA_Achr7P12540_001 | Banana | cytosol | 41.71 | 52.52 |
| EES15017 | Sorghum | nucleus | 58.86 | 52.02 |
| VIT_01s0011g05360.t01 | Wine grape | nucleus | 52.57 | 50.55 |
| KRH72989 | Soybean | nucleus | 50.29 | 50.0 |
| HORVU5Hr1G095410.1 | Barley | nucleus | 38.86 | 49.63 |
| KRH72991 | Soybean | nucleus | 49.71 | 49.43 |
| Solyc11g011160.1.1 | Tomato | nucleus | 45.14 | 49.38 |
| PGSC0003DMT400040569 | Potato | nucleus | 45.14 | 49.38 |
| TraesCS5D01G211400.1 | Wheat | nucleus | 53.14 | 49.21 |
| HORVU5Hr1G060800.2 | Barley | nucleus | 51.43 | 48.91 |
| KRH17357 | Soybean | nucleus | 48.57 | 48.3 |
| Os09t0402100-01 | Rice | nucleus | 58.29 | 47.89 |
| KRH17355 | Soybean | nucleus | 48.0 | 47.73 |
| TraesCS5B01G203600.1 | Wheat | nucleus | 51.43 | 47.62 |
| KRG97935 | Soybean | nucleus | 49.14 | 47.25 |
| VIT_15s0021g02830.t01 | Wine grape | nucleus | 33.14 | 47.15 |
| TraesCS5A01G204700.1 | Wheat | nucleus | 50.86 | 47.09 |
| KRH30939 | Soybean | nucleus | 49.14 | 46.74 |
| GSMUA_Achr7P10310_001 | Banana | nucleus | 44.57 | 45.88 |
| GSMUA_Achr5P05890_001 | Banana | cytosol | 65.71 | 44.23 |
| AT1G14900.1 | Thale cress | nucleus | 49.14 | 42.16 |
| CDY17659 | Canola | nucleus | 48.57 | 41.46 |
| Bra024870.1-P | Field mustard | nucleus | 45.14 | 41.36 |
| Solyc04g007890.2.1 | Tomato | nucleus | 42.29 | 41.34 |
| CDY36240 | Canola | nucleus | 48.57 | 41.26 |
| Bra017438.1-P | Field mustard | nucleus | 38.29 | 40.85 |
| CDY04096 | Canola | nucleus | 37.71 | 40.24 |
| PGSC0003DMT400075917 | Potato | nucleus | 42.86 | 39.89 |
| PGSC0003DMT400037815 | Potato | nucleus | 38.86 | 39.77 |
| CDY09431 | Canola | cytosol | 24.57 | 37.72 |
| OQU78653 | Sorghum | cytosol, mitochondrion, nucleus | 33.71 | 37.58 |
| GSMUA_Achr9P28490_001 | Banana | nucleus | 29.14 | 37.5 |
| Solyc05g051290.2.1 | Tomato | nucleus | 41.14 | 34.29 |
| VIT_15s0024g01410.t01 | Wine grape | plastid | 41.71 | 33.95 |
| VIT_09s0018g01850.t01 | Wine grape | plastid | 41.14 | 33.49 |
| CDY48812 | Canola | cytosol | 24.0 | 31.82 |
| VIT_13s0074g00560.t01 | Wine grape | plastid | 38.29 | 31.16 |
| CDY09432 | Canola | nucleus | 32.57 | 29.69 |
| Zm00001d020412_P001 | Maize | cytosol | 47.43 | 27.04 |
| EER98875 | Sorghum | nucleus | 45.71 | 24.62 |
| CDY48811 | Canola | mitochondrion, nucleus | 30.86 | 21.95 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:35.1 | InterPro:AT_hook_DNA-bd_motif | GO:GO:0000785 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006334 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSMUA_Achr6G04240_001 | EnsemblPlants:GSMUA_Achr6P04240_001 | EnsemblPlants:GSMUA_Achr6T04240_001 |
| InterPro:HMGA | InterPro:HMGA_plant | InterPro:Histone_H1/H5_H15 | InterPro:IPR005818 | InterPro:IPR036388 | UniProt:M0T422 |
| PFAM:PF00538 | PRINTS:PR00929 | PRINTS:PR00930 | PFscan:PS51504 | PANTHER:PTHR11467 | PANTHER:PTHR11467:SF49 |
| SMART:SM00384 | SMART:SM00526 | SUPFAM:SSF46785 | UniParc:UPI0002948CA7 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
HMG-Y-related protein A [Source:GMGC_GENE;Acc:GSMUA_Achr6G04240_001]
Coordinates
chr6:-:2894888..2895830
Molecular Weight (calculated)
18395.6 Da
IEP (calculated)
11.315
GRAVY (calculated)
-0.457
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MCWFVCELQM ITEAIEALND KNGSNKSAIS KYMESKYGEL PPAHSSLLTA HLARMKESGE LLFVKNNYIR PGADAPPKRG RGRPPKPKPA LPPVADLPSP
101: RPRGRPPKPK DPLAAAVAKA TAGLPRPRGR PPKVARPAVS VTAAPAAAAA AAGGVVKRGR GRPPKVKPSL VTEAA
101: RPRGRPPKPK DPLAAAVAKA TAGLPRPRGR PPKVARPAVS VTAAPAAAAA AAGGVVKRGR GRPPKVKPSL VTEAA
001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC
Arabidopsis Description
HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.