Factsheet for AT5G28900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G28850.2	Thale cress	cytosol	99.63	99.63
Bra036126.1-P	Field mustard	cytosol	87.5	87.34
CDY57012	Canola	cytosol	87.5	87.34
KRG97049	Soybean	cytosol	55.04	87.02
CDY00020	Canola	cytosol	87.5	86.69
GSMUA_Achr8P19010_001	Banana	cytosol	52.05	85.06
KRH68797	Soybean	cytosol	78.73	78.58
KRH34156	Soybean	cytosol	77.8	77.65
KRG92626	Soybean	cytosol	77.24	77.09
Solyc04g010070.2.1	Tomato	plastid	76.31	75.88
AT1G54450.1	Thale cress	cytosol	75.37	75.51
Solyc05g054980.2.1	Tomato	cytosol	75.56	75.14
GSMUA_Achr11P...	Banana	cytosol	75.56	74.86
GSMUA_AchrUn_...	Banana	cytosol	75.56	74.72
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	73.32	72.64
EER94083	Sorghum	cytosol	72.39	71.72
TraesCS1A01G153900.1	Wheat	cytosol	71.64	70.98
HORVU1Hr1G040980.1	Barley	cytosol	71.46	70.79
TraesCS1B01G171200.1	Wheat	cytosol	71.46	70.79
TraesCS1D01G152300.1	Wheat	cytosol	71.46	70.79
Zm00001d032708_P009	Maize	cytosol	71.27	70.74
AT1G03960.1	Thale cress	cytosol	66.23	67.11
Zm00001d014037_P004	Maize	cytosol	71.27	66.55
KRG97048	Soybean	nucleus	23.69	64.47
AT5G44090.2	Thale cress	endoplasmic reticulum, extracellular	65.49	61.26
AT5G18580.1	Thale cress	nucleus	18.66	20.83

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	EntrezGene:833013	ProteinID:AED93848.1
EMBL:AF272706	ArrayExpress:AT5G28900	EnsemblPlantsGene:AT5G28900	RefSeq:AT5G28900	TAIR:AT5G28900	RefSeq:AT5G28900-TAIR-G
EnsemblPlants:AT5G28900.1	TAIR:AT5G28900.1	EMBL:AY063937	EMBL:AY096482	Unigene:At.49079	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0046872
InterPro:IPR002048	RefSeq:NP_198242.1	PFAM:PF13202	PFAM:PF13499	PO:PO:0000293	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	UniProt:Q8VZQ4	SUPFAM:SSF47473	UniParc:UPI00000A64DE

Description

B''GAMMAProbable serine/threonine protein phosphatase 2A regulatory subunit B''gamma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ4]

Coordinates

chr5:+:10925635..10930462

Molecular Weight (calculated)

62021.9 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.338

Length

536 amino acids

Sequence
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.