CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93968
KRH02746
KRH03466
KRH05520
KRH05863
KRH07089
KRH13458
KRH15146
KRH15497
KRH19120
KRH21856
KRH29118
KRH42233
KRH42550
KRH44391
KRH47513
KRH51797
KRH54542
KRH56919
KRH58237
KRH58350
KRH58644
KRH60720
KRH61121
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	KRH44391	AT1G15570.1	21798944
AT5G28900.1	KRH47513	AT1G15570.1	21798944
AT5G28900.1	KRH05520	AT1G30120.1	21798944
AT5G28900.1	KRH15497	AT1G30120.1	21798944
AT5G28900.1	KRH42550	AT1G30120.1	21798944
AT5G28900.1	KRH58644	AT1G30120.1	21798944
AT5G28900.1	KRH13458	AT1G53510.1	21798944
AT5G28900.1	KRH21856	AT1G53510.1	21798944
AT5G28900.1	KRH05863	AT1G75400.1	21798944
AT5G28900.1	KRH15146	AT1G75400.1	21798944
AT5G28900.1	KRH51797	AT1G75400.1	21798944
AT5G28900.1	KRH61121	AT1G75400.1	21798944
AT5G28900.1	KRH03466	AT3G47620.1	21798944
AT5G28900.1	KRH54542	AT3G47620.1	21798944
AT5G28900.1	KRH56919	AT3G47620.1	21798944
AT5G28900.1	KRH63357	AT3G47620.1	21798944
AT5G28900.1	KRH42233	AT3G60360.1	21798944
AT5G28900.1	KRH58350	AT3G60360.1	21798944
AT5G28900.1	KRH02746	AT4G31550.1	21798944
AT5G28900.1	KRH19120	AT4G31550.1	21798944
AT5G28900.1	KRH29118	AT4G38770.1	21798944
AT5G28900.1	KRH60720	AT4G38770.1	21798944
AT5G28900.1	KRG93968	AT5G14390.1	21798944
AT5G28900.1	KRH07089	AT5G14390.1	21798944
AT5G28900.1	KRH58237	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97049	Soybean	cytosol	62.2	98.53
KRG97048	Soybean	nucleus	35.57	96.95
KRH34156	Soybean	cytosol	91.81	91.81
KRG92626	Soybean	cytosol	91.43	91.43
KRG92395	Soybean	cytosol	14.34	90.59
GSMUA_Achr8P19010_001	Banana	cytosol	54.19	88.72
KRG92396	Soybean	cytosol	12.66	88.31
KRH62662	Soybean	cytosol	8.57	86.79
CDY71370	Canola	extracellular	38.36	85.83
KRG92392	Soybean	cytosol	18.62	85.47
Bra010012.1-P	Field mustard	cytosol	80.45	80.3
CDX86212	Canola	cytosol	80.45	80.3
CDY48668	Canola	cytosol	80.45	80.3
Solyc04g010070.2.1	Tomato	plastid	80.26	79.96
AT5G28850.2	Thale cress	cytosol	78.58	78.73
AT5G28900.1	Thale cress	cytosol	78.58	78.73
GSMUA_AchrUn_...	Banana	cytosol	79.14	78.41
GSMUA_Achr11P...	Banana	cytosol	78.96	78.37
Solyc05g054980.2.1	Tomato	cytosol	78.4	78.11
CDY44814	Canola	cytosol	78.4	77.96
Bra021340.1-P	Field mustard	cytosol	78.4	77.96
AT1G54450.1	Thale cress	cytosol	77.65	77.94
KRH34399	Soybean	cytosol	77.84	77.26
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	77.65	77.08
CDY57012	Canola	cytosol	76.54	76.54
Bra036126.1-P	Field mustard	cytosol	76.54	76.54
EER94083	Sorghum	cytosol	76.72	76.16
TraesCS1A01G153900.1	Wheat	cytosol	75.98	75.42
HORVU1Hr1G040980.1	Barley	cytosol	75.79	75.23
TraesCS1D01G152300.1	Wheat	cytosol	75.79	75.23
TraesCS1B01G171200.1	Wheat	cytosol	75.79	75.23
CDY00020	Canola	cytosol	75.79	75.23
Zm00001d032708_P009	Maize	cytosol	75.61	75.19
Zm00001d014037_P004	Maize	cytosol	75.42	70.56
KRG92399	Soybean	cytosol	4.28	69.7
KRG92401	Soybean	cytosol, plastid	18.44	62.66
KRH50907	Soybean	cytosol	17.32	19.5
KRH02218	Soybean	cytosol	17.13	19.29

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	EntrezGene:100807531	MapMan:18.4.24.1.2.4	EMBL:ACUP02002125
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_03G251300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	UniProt:I1JRS9	InterPro:IPR002048	EnsemblPlants:KRH68797	ProteinID:KRH68797	ProteinID:KRH68797.1
ProteinID:KRH68798.1	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7
SUPFAM:SSF47473	UniParc:UPI000233A635	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:44708296..44716963

Molecular Weight (calculated)

62069.9 Da

IEP (calculated)

4.707

GRAVY (calculated)

-0.334

Length

537 amino acids

Sequence
(BLAST)

001: MSMEVISDTA SLEVDLLQLP EVSSLALKSN LTFVETLFEQ WLSLPESNRL VTSLVNEAKS GAPLNVPGNC SSPNAASNSL PSMFPAGTAP PLSPRSTSGS
101: PRIVKQRVGP SNLGSPLKVV SEPVKEVIPQ FYFQFGRPPP NDLKEKCLIR IDHLFHDHMD GLQIHEFKSV TKEVCKLPSF FSTSLFRKID NGTGVVTRKT
201: FIDYWINGNM LTKDIATQIY TILKQPQLKY LTQDDFKPVL CELLATHPGL EFLQSTPEFQ ERYAETVIYR IYYYINRSGN GRLTLRELKR GNIIDAMLHA
301: DEEEDINKVL RYFSYEHFYV IYCKFWELDT DHDFLIDKEN LIRYGNHALT YRIVDRIFSQ VPRRFTSKVE GKMGYEDFVY FILSEEDKSS EPSLEYWFKC
401: IDLDGNGVLT RNELQFFYEE QLHRMECMAQ EPVLFEDILC QIIDMIGPEE ESYITLRDLK GGKLSGSVFN ILFNLNKFMA FETRDPFLIR QERENPTLTE
501: WDRFAHREYI RLSMEEDVED ASNGSAEVWD ESLEAPF

Best Arabidopsis Sequence Match ( AT5G28900.1 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF

Arabidopsis Description

B''GAMMAProbable serine/threonine protein phosphatase 2A regulatory subunit B''gamma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.