Factsheet for Bra010012.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86212	Canola	cytosol	100.0	100.0
CDY48668	Canola	cytosol	100.0	100.0
KRG97049	Soybean	cytosol	56.13	89.09
Bra036126.1-P	Field mustard	cytosol	87.36	87.52
GSMUA_Achr8P19010_001	Banana	cytosol	51.86	85.06
KRH68797	Soybean	cytosol	80.3	80.45
KRH34156	Soybean	cytosol	79.74	79.89
KRG92626	Soybean	cytosol	79.37	79.52
Solyc04g010070.2.1	Tomato	plastid	77.32	77.18
Bra021340.1-P	Field mustard	cytosol	76.95	76.67
Solyc05g054980.2.1	Tomato	cytosol	76.77	76.62
GSMUA_Achr11P...	Banana	cytosol	76.77	76.34
GSMUA_AchrUn_...	Banana	cytosol	76.77	76.2
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	74.35	73.94
EER94083	Sorghum	cytosol	73.98	73.57
Zm00001d032708_P009	Maize	cytosol	73.23	72.96
TraesCS1A01G153900.1	Wheat	cytosol	72.86	72.46
HORVU1Hr1G040980.1	Barley	cytosol	72.68	72.27
TraesCS1B01G171200.1	Wheat	cytosol	72.68	72.27
TraesCS1D01G152300.1	Wheat	cytosol	72.68	72.27
Zm00001d014037_P004	Maize	cytosol	73.23	68.64
Bra027527.1-P	Field mustard	cytosol	67.1	67.73
KRG97048	Soybean	nucleus	24.54	67.01
Bra030551.1-P	Field mustard	cytosol	66.36	66.6
Bra002169.1-P	Field mustard	nucleus	18.77	21.04
Bra023686.1-P	Field mustard	nucleus	18.4	20.54

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	EnsemblPlantsGene:Bra010012	EnsemblPlants:Bra010012.1
EnsemblPlants:Bra010012.1-P	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	UniProt:M4D0L4	PFAM:PF13202	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	SUPFAM:SSF47473	UniParc:UPI000253EE67	SEG:seg

Description

AT5G28900 (E=1e-290) | calcium-binding EF hand family protein

Coordinates

chrA06:+:18622712..18625770

Molecular Weight (calculated)

62235.0 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.381

Length

538 amino acids

Sequence
(BLAST)

001: MLDAVAPGDM ASLDADLLQL QEMSTFVLKS RPEFTQKLFD QWLSLPEAHR QVASLLQDAV AGAPLNVPGS ASGSGPGTSN SLPSMFPAGS APPLSPRSCG
101: SPRTMKQRAP SNLGSPLKVL NEPVKESIPQ FYFQNGRPPP SEIKEQCMFR VNHFFYGHTD GLQIQEFKLV TREICKLPSF FSTSLFRKID VNNTGFVTRE
201: AFIDYWVNGN MLIMDKTTQI FKILKQQNQN FLVKDDFKPL LKELLATHPG LEFLQGTPEF QERYAETVTY RIFYYINRSG NGRLTFRELK RGNLIDAMLH
301: ADEEEDINKV LRYFSYEHFY VIYCKFWELD TDHDFLIDKE NLMKYGNHAL TYRIVDRIFS QVARKFTSKV EGKMGYEDFV YFILAEEDKS SEPSLEYWFK
401: CIDLDANGIL TRNEMQFFYE EQLHRMECMA QEAVLFEDIL CQLIDMIGPE DESYITLNDL KGSKLSGNVF NILFNLNKFM AFETRDPFLI RQERENPTLT
501: EWDRFAHREY IRLSMEEDVE DASNGSAEVW DESLEAPF

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.