CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER91737
EER91738
EER92564
EER92565
EER93752
EER94340
EER94343
EER98875
EES00516
EES03779
EES05532
EES07255
EES11384
EES14755
EES15017
EES16391
KXG19644
KXG23504
OQU77084
OQU78653
OQU79022
OQU80556
OQU84894
OQU86641
OQU91730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	EER98875	AT1G14900.1	21798944
AT5G28900.1	EES15017	AT1G14900.1	21798944
AT5G28900.1	OQU78653	AT1G14900.1	21798944
AT5G28900.1	OQU80556	AT1G14900.1	21798944
AT5G28900.1	KXG23504	AT1G15570.1	21798944
AT5G28900.1	OQU77084	AT1G15570.1	21798944
AT5G28900.1	EER93752	AT1G30120.1	21798944
AT5G28900.1	EES16391	AT1G30120.1	21798944
AT5G28900.1	EES00516	AT1G75400.1	21798944
AT5G28900.1	OQU86641	AT1G75400.1	21798944
AT5G28900.1	EES05532	AT3G01180.1	21798944
AT5G28900.1	KXG19644	AT3G01180.1	21798944
AT5G28900.1	OQU91730	AT3G01180.1	21798944
AT5G28900.1	EER88112	AT3G47620.1	21798944
AT5G28900.1	EES07255	AT3G47620.1	21798944
AT5G28900.1	EES03779	AT3G60360.1	21798944
AT5G28900.1	EES11384	AT4G31550.1	21798944
AT5G28900.1	EES14755	AT4G31550.1	21798944
AT5G28900.1	OQU84894	AT4G31550.1	21798944
AT5G28900.1	EER91737	AT4G38770.1	21798944
AT5G28900.1	EER91738	AT4G38770.1	21798944
AT5G28900.1	EER92564	AT4G38770.1	21798944
AT5G28900.1	EER92565	AT4G38770.1	21798944
AT5G28900.1	EER94340	AT4G38770.1	21798944
AT5G28900.1	EER94343	AT4G38770.1	21798944
AT5G28900.1	OQU79022	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032708_P009	Maize	cytosol	96.86	97.04
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	92.79	92.79
HORVU1Hr1G040980.1	Barley	cytosol	92.24	92.24
TraesCS1A01G153900.1	Wheat	cytosol	91.68	91.68
TraesCS1D01G152300.1	Wheat	cytosol	91.5	91.5
TraesCS1B01G171200.1	Wheat	cytosol	91.31	91.31
Zm00001d014037_P004	Maize	cytosol	96.86	91.29
KRG92395	Soybean	cytosol	14.05	89.41
GSMUA_Achr8P19010_001	Banana	cytosol	54.16	89.33
KRG97049	Soybean	cytosol	53.6	85.55
KRG92392	Soybean	cytosol	18.48	85.47
KRG92396	Soybean	cytosol	12.01	84.42
GSMUA_AchrUn_...	Banana	cytosol	81.7	81.55
GSMUA_Achr11P...	Banana	cytosol	81.52	81.52
KRH62662	Soybean	cytosol	7.95	81.13
CDY71370	Canola	extracellular	35.86	80.83
KRH68797	Soybean	cytosol	76.16	76.72
VIT_07s0005g03730.t01	Wine grape	cytosol	77.08	76.23
KRH34156	Soybean	cytosol	75.42	75.98
KRG92626	Soybean	cytosol	75.23	75.79
Solyc04g010070.2.1	Tomato	plastid	75.23	75.51
Solyc05g054980.2.1	Tomato	cytosol	74.68	74.95
Bra010012.1-P	Field mustard	cytosol	73.57	73.98
CDY48668	Canola	cytosol	73.57	73.98
CDX86212	Canola	cytosol	73.57	73.98
KRH34399	Soybean	cytosol	73.38	73.38
AT5G28900.1	Thale cress	cytosol	71.72	72.39
AT5G28850.2	Thale cress	cytosol	71.72	72.39
CDY57012	Canola	cytosol	71.35	71.88
Bra036126.1-P	Field mustard	cytosol	71.35	71.88
AT1G03960.1	Thale cress	cytosol	69.69	71.27
AT1G54450.1	Thale cress	cytosol	70.43	71.22
CDY00020	Canola	cytosol	70.61	70.61
CDY44814	Canola	cytosol	70.43	70.56
Bra021340.1-P	Field mustard	cytosol	70.43	70.56
CDY13127	Canola	cytosol	68.95	70.11
Bra027527.1-P	Field mustard	cytosol	68.58	69.61
CDY36971	Canola	cytosol	67.65	69.06
CDX86655	Canola	cytosol	66.91	68.69
Bra030551.1-P	Field mustard	cytosol	67.84	68.47
CDY15483	Canola	cytosol	66.91	67.79
EES06429	Sorghum	cytosol	65.8	65.56
AT5G44090.2	Thale cress	endoplasmic reticulum, extracellular	66.73	63.0
KRG97048	Soybean	nucleus	22.37	61.42
KRG92401	Soybean	cytosol, plastid	17.93	61.39
VIT_14s0036g00730.t01	Wine grape	extracellular	20.7	60.87
VIT_14s0036g00750.t01	Wine grape	cytosol	57.67	60.12
KRG92399	Soybean	cytosol	2.77	45.45
EES17718	Sorghum	nucleus, plastid	19.22	21.22

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	EntrezGene:8067423	UniProt:C5WYG5
EnsemblPlants:EER94083	ProteinID:EER94083	ProteinID:EER94083.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	EnsemblPlantsGene:SORBI_3001G220300	SUPFAM:SSF47473	unigene:Sbi.660
UniParc:UPI0001A827E6	RefSeq:XP_002467085.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:20730739..20740993

Molecular Weight (calculated)

61959.6 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.340

Length

541 amino acids

Sequence
(BLAST)

001: MEVEPARRDA AALDPELLQL AELAPGALRE NSIIADALYS QWLVLPETAK LVKSLIEDAK TGAVLNVVGS SASTNAASSS SLPSMFPAGS APPLSPRSTS
101: GSPRVMRRGS GAGPSSLGSP LKLVSEPVRE VIPQFYFKNG RPPTKDLKEQ CLSRTDHLFF GGEGLQIQEF RSVTKDICKL PSFFSSVLFK KIDVACTGTV
201: SRDAFVEYWI NDNKITMDMA SQIFEILRKP GYTYLTQDDF KPVLKELLAT HPGLEFLQGT PEFQERYAET VIYRIFYSIN RSGNGHLTLR ELKRGNLIAA
301: LQQLDEEEDI NKVLRYFSYE HFYVIYCKFW ELDTDHDFLI DKENLIRYGN HSLTYRIVDR IFTQIPRKFT SMSEGKMGYE DFVYFILSEE DKSSEPSLEY
401: WFKCIDLDGN GILTSNEMQF FYEEQLHRME CMAQEPVLFE DILCQMIDMI GPENESYFTL RDLKRCKLSG NIFNILFNLN KFMAFETRDP FLIRQERENP
501: TLTEWDRFAH REYIRLSMEE DGEDASNGSG DVWDESLEAP F

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.