CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95951
EES05647
EES07517
KXG37365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	EES05647	AT3G27960.1	21798944
AT1G75400.1	EER95951	AT3G22960.1	21798944
AT1G75400.1	KXG37365	AT3G22960.1	21798944
AT1G75400.1	EES07517	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008306_P012	Maize	cytosol	91.47	89.62
HORVU3Hr1G036310.2	Barley	plastid	82.26	83.22
Os01t0261100-01	Rice	cytosol	82.49	83.06
TraesCS3D01G183800.1	Wheat	plastid	81.57	82.71
TraesCS3B01G208200.1	Wheat	plastid	81.57	82.52
TraesCS3A01G176600.1	Wheat	plastid	81.34	82.28
Zm00001d040317_P005	Maize	cytosol	84.33	79.91
OQU86641	Sorghum	nucleus	63.13	64.02
GSMUA_Achr4P24550_001	Banana	nucleus	48.39	49.3
VIT_03s0038g04400.t01	Wine grape	nucleus	43.78	41.76
VIT_18s0001g13060.t01	Wine grape	nucleus	41.47	40.63
KRH05863	Soybean	nucleus	39.17	39.17
KRH51797	Soybean	nucleus	38.71	38.89
KRH15146	Soybean	nucleus	38.71	38.71
KRH61121	Soybean	plastid	39.4	38.6
VIT_04s0079g00570.t01	Wine grape	cytosol	10.83	37.9
PGSC0003DMT400066093	Potato	nucleus	35.94	37.41
Solyc10g054030.1.1	Tomato	nucleus	35.71	37.26
KRH20799	Soybean	nucleus	37.56	37.05
KRH27444	Soybean	nucleus, plastid	35.94	36.11
KRH60799	Soybean	nucleus, plastid	36.18	36.09
KRH51493	Soybean	nucleus	36.18	36.09
AT1G75400.1	Thale cress	plastid	37.1	35.38
CDY13812	Canola	cytosol, nucleus, peroxisome	32.49	35.34
Solyc01g109910.2.1	Tomato	nucleus	37.33	35.22
PGSC0003DMT400089080	Potato	nucleus	35.71	34.68
Bra003754.1-P	Field mustard	nucleus, plastid	16.36	34.3
CDX68130	Canola	nucleus, plastid	16.36	34.3
Bra031193.1-P	Field mustard	nucleus	32.26	33.98
CDY47525	Canola	nucleus, plastid	36.18	33.91
CDY39030	Canola	nucleus, plastid	16.59	33.64
CDY69665	Canola	nucleus, plastid	35.94	33.62
AT2G21500.2	Thale cress	nucleus	32.49	33.49
PGSC0003DMT400028504	Potato	cytosol, plastid	8.29	32.73
CDX82036	Canola	nucleus	30.41	32.67
Bra015846.1-P	Field mustard	nucleus	36.41	31.92
Bra008196.1-P	Field mustard	cytosol	17.28	31.51
AT1G19680.1	Thale cress	nucleus	31.11	30.41
AT4G39140.3	Thale cress	nucleus	29.72	30.07
CDY41965	Canola	nucleus	29.26	30.02
CDY42611	Canola	nucleus	29.03	30.0
Bra011873.1-P	Field mustard	nucleus	29.03	29.1
CDY12123	Canola	nucleus	27.88	28.67
Bra010702.1-P	Field mustard	nucleus	26.96	28.33
CDX90314	Canola	nucleus	26.96	28.26
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	26.04	28.25
CDX72716	Canola	nucleus	25.12	27.95
VIT_04s0079g00560.t01	Wine grape	cytosol	9.68	27.1
Bra033599.1-P	Field mustard	nucleus	24.65	26.95
EER92330	Sorghum	nucleus	18.2	17.1
KXG38574	Sorghum	plastid	16.36	16.67

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8085816	UniProt:C5XGF9	EnsemblPlants:EES00516	ProteinID:EES00516
ProteinID:EES00516.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083
ProteinID:OQU86644.1	PFAM:PF00097	PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	SMART:SM00184
EnsemblPlantsGene:SORBI_3003G119700	SUPFAM:SSF57850	unigene:Sbi.9700	UniParc:UPI0001A849E2	RefSeq:XP_002455396.1	InterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:10861496..10865573

Molecular Weight (calculated)

47772.0 Da

IEP (calculated)

10.020

GRAVY (calculated)

-0.757

Length

434 amino acids

Sequence
(BLAST)

001: MGANCCVAAK ERTQPCITPI EVSAYRNVRH SPSWSFRWDN RTHIEDIMDI PTLFSNHSSG SIRPDTKSGS IAPTEGFSNG NSRGTSPSNV FHGAKWHKSD
101: KKTEAPKVTK VDPRADRTTA SNCSPEAKLS RKSLDMSSVA SDLKTSVSVP STPPLVSRAD PSSSRGHSQP TDSDSTKKAR RSPGYQLYRQ VSDSKIPSLR
201: SLNEISSPEG RPSSSMLSVC SNDLSAAGSY GESSDGWSMR TFSEMVATSQ RERWSLDSEL LGSISSKMTR SSASNSTTLP PDQEVCKLCL KMLKERSTWN
301: AQELAVVAVL LCGHVYHADC LDSITTEADK YDPPCPVCTH GEKCTVKLFG KLESKIKNKI PKNVAVDMNP DGNGNKHQKK GRREPRLGTS SSMKVPFSRP
401: FLRRHFSIGS RPPRSVSETD STRKKGFWAR HWRE

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.