Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47525 | Canola | nucleus, plastid | 85.27 | 83.8 |
| CDY69665 | Canola | nucleus, plastid | 84.84 | 83.19 |
| Bra015846.1-P | Field mustard | nucleus | 84.62 | 77.78 |
| AT1G19680.1 | Thale cress | nucleus | 54.95 | 56.31 |
| VIT_18s0001g13060.t01 | Wine grape | nucleus | 50.77 | 52.14 |
| KRH05863 | Soybean | nucleus | 49.45 | 51.84 |
| KRH51797 | Soybean | nucleus | 48.13 | 50.69 |
| KRH61121 | Soybean | plastid | 48.79 | 50.11 |
| KRH15146 | Soybean | nucleus | 47.25 | 49.54 |
| AT2G21500.2 | Thale cress | nucleus | 34.51 | 37.29 |
| EES00516 | Sorghum | cytosol | 35.38 | 37.1 |
| Os01t0261100-01 | Rice | cytosol | 34.73 | 36.66 |
| Zm00001d008306_P012 | Maize | cytosol | 34.73 | 35.67 |
| HORVU3Hr1G036310.2 | Barley | plastid | 33.63 | 35.66 |
| TraesCS3B01G208200.1 | Wheat | plastid | 33.63 | 35.66 |
| TraesCS3D01G183800.1 | Wheat | plastid | 33.41 | 35.51 |
| TraesCS3A01G176600.1 | Wheat | plastid | 33.41 | 35.43 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 32.97 | 35.05 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 32.53 | 34.58 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 32.31 | 34.27 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 31.65 | 34.2 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 32.09 | 34.19 |
| AT4G39140.3 | Thale cress | nucleus | 30.55 | 32.4 |
| OQU86641 | Sorghum | nucleus | 30.11 | 32.01 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 29.89 | 31.92 |
| Zm00001d040317_P005 | Maize | cytosol | 31.65 | 31.44 |
| GSMUA_Achr10P... | Banana | nucleus | 29.01 | 28.7 |
| AT1G14180.1 | Thale cress | nucleus | 14.07 | 18.39 |
| AT5G18260.1 | Thale cress | nucleus, plastid | 11.21 | 15.94 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:843876 | UniProt:A0A178WAT0 | ProteinID:AEE35715.1 | EMBL:AK117693 |
| ArrayExpress:AT1G75400 | EnsemblPlantsGene:AT1G75400 | RefSeq:AT1G75400 | TAIR:AT1G75400 | RefSeq:AT1G75400-TAIR-G | EnsemblPlants:AT1G75400.1 |
| TAIR:AT1G75400.1 | EMBL:AY128403 | Unigene:At.34780 | EMBL:BT000078 | ncoils:Coil | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_177673.1 | ProteinID:OAP15540.1 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF8 | UniProt:Q8L7K7 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00000AC738 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
Coordinates
chr1:+:28296886..28299768
Molecular Weight (calculated)
49303.8 Da
IEP (calculated)
9.757
GRAVY (calculated)
-0.571
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.