Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G75400.1 | Thale cress | plastid | 56.31 | 54.95 |
| CDX68130 | Canola | nucleus, plastid | 22.52 | 48.31 |
| Bra003754.1-P | Field mustard | nucleus, plastid | 22.52 | 48.31 |
| CDY39030 | Canola | nucleus, plastid | 21.17 | 43.93 |
| VIT_18s0001g13060.t01 | Wine grape | nucleus | 43.47 | 43.57 |
| KRH05863 | Soybean | nucleus | 41.44 | 42.4 |
| KRH61121 | Soybean | plastid | 41.67 | 41.76 |
| KRH51797 | Soybean | nucleus | 40.09 | 41.2 |
| KRH15146 | Soybean | nucleus | 39.86 | 40.78 |
| Bra008196.1-P | Field mustard | cytosol | 20.72 | 38.66 |
| AT2G21500.2 | Thale cress | nucleus | 30.41 | 32.07 |
| Os01t0261100-01 | Rice | cytosol | 30.63 | 31.55 |
| EES00516 | Sorghum | cytosol | 30.41 | 31.11 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 29.28 | 30.88 |
| TraesCS3B01G208200.1 | Wheat | plastid | 29.73 | 30.77 |
| HORVU3Hr1G036310.2 | Barley | plastid | 29.73 | 30.77 |
| TraesCS3D01G183800.1 | Wheat | plastid | 29.28 | 30.37 |
| TraesCS3A01G176600.1 | Wheat | plastid | 29.28 | 30.3 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 29.05 | 30.14 |
| AT4G39140.3 | Thale cress | nucleus | 29.05 | 30.07 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 28.83 | 30.05 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 28.83 | 29.91 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 28.83 | 29.84 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 28.6 | 29.74 |
| Zm00001d008306_P012 | Maize | cytosol | 28.83 | 28.89 |
| OQU86641 | Sorghum | nucleus | 26.8 | 27.8 |
| Zm00001d040317_P005 | Maize | cytosol | 27.93 | 27.07 |
| GSMUA_Achr10P... | Banana | nucleus | 27.93 | 26.96 |
| AT1G14180.1 | Thale cress | nucleus | 15.09 | 19.25 |
| AT5G18260.1 | Thale cress | nucleus, plastid | 11.94 | 16.56 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:838555 | ProteinID:AAG12558.1 | ProteinID:AEE29882.1 | ArrayExpress:AT1G19680 |
| EnsemblPlantsGene:AT1G19680 | RefSeq:AT1G19680 | TAIR:AT1G19680 | RefSeq:AT1G19680-TAIR-G | EnsemblPlants:AT1G19680.1 | TAIR:AT1G19680.1 |
| Unigene:At.68550 | EMBL:BT029170 | EMBL:DQ059098 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_173398.2 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR31150 |
| PANTHER:PTHR31150:SF8 | UniProt:Q9FXG6 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000AAF65 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
Coordinates
chr1:+:6805430..6807862
Molecular Weight (calculated)
47977.9 Da
IEP (calculated)
9.269
GRAVY (calculated)
-0.582
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.