Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra025315.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19680.1 | Bra025315.1-P | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39030 | Canola | nucleus, plastid | 71.85 | 79.91 |
| Bra003754.1-P | Field mustard | nucleus, plastid | 28.99 | 33.33 |
| Bra015846.1-P | Field mustard | nucleus | 45.8 | 22.02 |
| AT1G19680.1 | Thale cress | nucleus | 38.66 | 20.72 |
| KRH51797 | Soybean | nucleus | 33.61 | 18.52 |
| KRH15146 | Soybean | nucleus | 33.61 | 18.43 |
| KRH05863 | Soybean | nucleus | 33.61 | 18.43 |
| VIT_18s0001g13060.t01 | Wine grape | nucleus | 33.61 | 18.06 |
| KRH61121 | Soybean | plastid | 33.61 | 18.06 |
| Bra010702.1-P | Field mustard | nucleus | 31.09 | 17.92 |
| Bra033599.1-P | Field mustard | nucleus | 29.83 | 17.88 |
| EES00516 | Sorghum | cytosol | 31.51 | 17.28 |
| Bra031193.1-P | Field mustard | nucleus | 29.41 | 16.99 |
| Zm00001d008306_P012 | Maize | cytosol | 30.67 | 16.48 |
| Os01t0261100-01 | Rice | cytosol | 29.83 | 16.47 |
| Bra011873.1-P | Field mustard | nucleus | 29.83 | 16.4 |
| TraesCS3A01G176600.1 | Wheat | plastid | 29.41 | 16.32 |
| TraesCS3B01G208200.1 | Wheat | plastid | 29.41 | 16.32 |
| OQU86641 | Sorghum | nucleus | 28.99 | 16.12 |
| TraesCS3D01G183800.1 | Wheat | plastid | 28.99 | 16.12 |
| HORVU3Hr1G036310.2 | Barley | plastid | 28.99 | 16.08 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 27.73 | 15.46 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 27.73 | 15.42 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 27.73 | 15.42 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 26.89 | 15.2 |
| Bra019673.1-P | Field mustard | nucleus, plastid | 21.43 | 15.04 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 26.89 | 14.92 |
| Bra026851.1-P | Field mustard | nucleus, plastid | 18.91 | 14.29 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 25.21 | 14.08 |
| Zm00001d040317_P005 | Maize | cytosol | 26.89 | 13.97 |
| GSMUA_Achr10P... | Banana | nucleus | 26.47 | 13.7 |
| Bra002147.1-P | Field mustard | nucleus | 14.71 | 9.11 |
Protein Annotations
| EnsemblPlants:Bra008196.1 | EnsemblPlants:Bra008196.1-P | EnsemblPlantsGene:Bra008196 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD |
| ncoils:Coil | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF8 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0002545B46 |
| UniProt:M4CVE9 | MapMan:35.2 | : | : | : | : |
Description
AT1G75400 (E=1e-035) | protein binding / zinc ion binding
Coordinates
chrA02:+:13708689..13709932
Molecular Weight (calculated)
26323.1 Da
IEP (calculated)
8.418
GRAVY (calculated)
-0.514
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVCCVAVK DRKLPPPCNS SGLHSIIDLE FDDSSLASHD PIESIVPAAP PKPSEGRWSS TCSNDLATGS HYASSEGDWS LNTFSELGGV FSKGQMMSSV
101: AAVLACGHVY HAECLETVTT EIEKYDPACP ICTIGEKRVA KVTRKALNAE AEAKAKQFKR CKNRLMDTEC DEFTFQKTGK ALKMEPPSRS SKSTSMSFLK
201: WHSKWSKPSS KDSVLKKWFW SRHLYNRSSS SIEFHSNR
101: AAVLACGHVY HAECLETVTT EIEKYDPACP ICTIGEKRVA KVTRKALNAE AEAKAKQFKR CKNRLMDTEC DEFTFQKTGK ALKMEPPSRS SKSTSMSFLK
201: WHSKWSKPSS KDSVLKKWFW SRHLYNRSSS SIEFHSNR
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.