Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41965 | Canola | nucleus | 97.46 | 99.76 |
| AT4G39140.3 | Thale cress | nucleus | 81.52 | 82.28 |
| Bra031193.1-P | Field mustard | nucleus | 61.2 | 64.32 |
| Bra010702.1-P | Field mustard | nucleus | 57.27 | 60.05 |
| Bra033599.1-P | Field mustard | nucleus | 51.27 | 55.92 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 12.01 | 47.27 |
| KRH60799 | Soybean | nucleus, plastid | 46.42 | 46.21 |
| KRH51493 | Soybean | nucleus | 45.96 | 45.75 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 46.42 | 44.18 |
| KRH20799 | Soybean | nucleus | 44.34 | 43.64 |
| KRH27444 | Soybean | nucleus, plastid | 43.19 | 43.29 |
| PGSC0003DMT400066093 | Potato | nucleus | 39.26 | 40.77 |
| Solyc01g109910.2.1 | Tomato | nucleus | 42.96 | 40.43 |
| PGSC0003DMT400089080 | Potato | nucleus | 41.34 | 40.04 |
| Solyc10g054030.1.1 | Tomato | nucleus | 38.34 | 39.9 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 10.62 | 37.1 |
| Bra003754.1-P | Field mustard | nucleus, plastid | 15.94 | 33.33 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 30.95 | 31.83 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 29.79 | 30.28 |
| Os01t0261100-01 | Rice | cytosol | 29.79 | 29.93 |
| Bra008196.1-P | Field mustard | cytosol | 16.4 | 29.83 |
| EES00516 | Sorghum | cytosol | 29.1 | 29.03 |
| HORVU3Hr1G036310.2 | Barley | plastid | 28.41 | 28.67 |
| TraesCS3D01G183800.1 | Wheat | plastid | 27.94 | 28.27 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 27.48 | 27.8 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 27.48 | 27.8 |
| Zm00001d008306_P012 | Maize | cytosol | 28.41 | 27.77 |
| TraesCS3A01G176600.1 | Wheat | plastid | 27.48 | 27.74 |
| TraesCS3B01G208200.1 | Wheat | plastid | 27.48 | 27.74 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 27.25 | 27.51 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 27.02 | 27.4 |
| Bra015846.1-P | Field mustard | nucleus | 31.18 | 27.27 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 9.7 | 27.1 |
| OQU86641 | Sorghum | nucleus | 26.33 | 26.64 |
| Zm00001d040317_P005 | Maize | cytosol | 24.94 | 23.58 |
| GSMUA_Achr10P... | Banana | nucleus | 24.71 | 23.26 |
| Bra026851.1-P | Field mustard | nucleus, plastid | 15.7 | 21.59 |
| Bra019673.1-P | Field mustard | nucleus, plastid | 15.47 | 19.76 |
| Bra002147.1-P | Field mustard | nucleus | 15.01 | 16.93 |
Protein Annotations
| EnsemblPlants:Bra011873.1 | EnsemblPlants:Bra011873.1-P | EnsemblPlantsGene:Bra011873 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI0002545E83 | UniProt:M4D5W6 | MapMan:35.2 | : | : |
Description
AT4G39140 (E=5e-179) | protein binding / zinc ion binding
Coordinates
chrA01:-:131632..133177
Molecular Weight (calculated)
47991.1 Da
IEP (calculated)
8.270
GRAVY (calculated)
-0.622
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAR DKMVLVVPPN ETERRPSPTW SFRWDNHNRG GRVAGEDSSS LTWLSDGISR NDGSEIKFGS AFVSSQGSPL DSLRTQPLHK SPASVCLYMN
101: LVADLSFPRN SSMDTVFEQK ENDSTQSVAP SYPSPAQFSL SHTSSFPASP LSPQSYFHPS SSASSLKLTQ RPRLSKQVSD SRIYGMNSLS RSSATEETQE
201: IPLRYGSSQS GPSESWSLQA FSEMMSSSRS NEPLSYDNDF FGLDRDKIDH HGNRVISNHH QQTCGACSRP LSEKSMWSSQ KIFMTNELSV SAILACGHVY
301: HGECLEQMTP EIDKFDPSCP ICTFGEKKTA KLSEKALKVE MDLKARHNKR LRNRVLDSDF DCDDLVMYDH SHMPAAAADK SPELVSSSSV KGYSAKPFLA
401: RHFSFGSRGN SKSIKENLPV KKKGFFWTKS SKI
101: LVADLSFPRN SSMDTVFEQK ENDSTQSVAP SYPSPAQFSL SHTSSFPASP LSPQSYFHPS SSASSLKLTQ RPRLSKQVSD SRIYGMNSLS RSSATEETQE
201: IPLRYGSSQS GPSESWSLQA FSEMMSSSRS NEPLSYDNDF FGLDRDKIDH HGNRVISNHH QQTCGACSRP LSEKSMWSSQ KIFMTNELSV SAILACGHVY
301: HGECLEQMTP EIDKFDPSCP ICTFGEKKTA KLSEKALKVE MDLKARHNKR LRNRVLDSDF DCDDLVMYDH SHMPAAAADK SPELVSSSSV KGYSAKPFLA
401: RHFSFGSRGN SKSIKENLPV KKKGFFWTKS SKI
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.