Factsheet for PGSC0003DMT400089080

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109910.2.1	Tomato	nucleus	89.49	86.96
PGSC0003DMT400028504	Potato	cytosol, plastid	18.34	74.55
PGSC0003DMT400066093	Potato	nucleus	65.77	70.5
VIT_03s0038g04400.t01	Wine grape	nucleus	59.06	58.02
KRH51493	Soybean	nucleus	52.57	54.02
KRH60799	Soybean	nucleus, plastid	52.35	53.79
KRH27444	Soybean	nucleus, plastid	48.99	50.69
KRH20799	Soybean	nucleus	49.66	50.45
AT2G21500.2	Thale cress	nucleus	42.06	44.66
CDY13812	Canola	cytosol, nucleus, peroxisome	39.82	44.61
AT4G39140.3	Thale cress	nucleus	42.28	44.06
VIT_04s0079g00570.t01	Wine grape	cytosol	12.08	43.55
Bra031193.1-P	Field mustard	nucleus	40.04	43.45
CDY42611	Canola	nucleus	40.72	43.33
CDY41965	Canola	nucleus	39.82	42.08
CDY12123	Canola	nucleus	39.6	41.94
CDX82036	Canola	nucleus	37.58	41.58
Bra011873.1-P	Field mustard	nucleus	40.04	41.34
Bra010702.1-P	Field mustard	nucleus	36.47	39.47
CDX90314	Canola	nucleus	36.47	39.37
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	35.12	39.25
VIT_04s0079g00560.t01	Wine grape	cytosol	13.42	38.71
CDX72716	Canola	nucleus	32.89	37.69
TraesCS3A01G176900.1	Wheat	cytosol	34.9	36.45
GSMUA_Achr6P08950_001	Banana	nucleus	34.23	36.34
TraesCS3B01G208100.1	Wheat	cytosol	34.68	36.22
HORVU3Hr1G036290.3	Barley	cytosol	34.68	36.13
TraesCS3D01G183700.1	Wheat	cytosol	34.45	36.07
Os01t0261100-01	Rice	cytosol	34.45	35.73
EES00516	Sorghum	cytosol	34.68	35.71
HORVU3Hr1G036310.2	Barley	plastid	33.78	35.2
GSMUA_Achr4P24550_001	Banana	nucleus	33.33	34.98
TraesCS3B01G208200.1	Wheat	plastid	33.33	34.73
TraesCS3D01G183800.1	Wheat	plastid	33.11	34.58
TraesCS3A01G176600.1	Wheat	plastid	33.11	34.5
Bra033599.1-P	Field mustard	nucleus	30.43	34.26
Zm00001d008306_P012	Maize	cytosol	33.78	34.09
OQU86641	Sorghum	nucleus	32.44	33.88
Zm00001d040317_P005	Maize	cytosol	29.08	28.38
GSMUA_Achr10P...	Banana	nucleus	27.07	26.3
PGSC0003DMT400047431	Potato	nucleus, plastid	18.79	20.74
PGSC0003DMT400020268	Potato	nucleus	10.29	20.44
PGSC0003DMT400078932	Potato	nucleus	10.07	19.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400089080	EnsemblPlantsGene:PGSC0003DMG400038651	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFAM:PF13639	PFscan:PS50089	PGSC:PGSC0003DMG400038651
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029480F9	UniProt:M1DHE3	MapMan:35.2

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400038651]

Coordinates

chr1:+:86298533..86301285

Molecular Weight (calculated)

49011.4 Da

IEP (calculated)

8.795

GRAVY (calculated)

-0.492

Length

447 amino acids

Sequence
(BLAST)

001: MGSACCVAAK DRAVINGSTS ETLQSDVRYS PSWSFRWDSR GRVAGEETSV NWSSDGVGGN DRLEFKSGTT VETLYASEEG SPLDSFRSLA LQKSPAFDCN
101: TGNSMLPLSD RVKDSLVLDM VFALHKERAE LDRCLQVKES FESTAVPCPS PLKLSSSDPS VSSLSASPLS TKSQLLPANS TLLPQYSSGH QLGRRVSDSH
201: IPRIKSPTFS ISEESSSFML PSWSNESTRG SNGGSSDGWS VPAFSDLLAN PRRDRWSFDS ESMGFHRDKM SKASGWSSGS PFIDLQTCGI CTKLLTERSS
301: WSSNELVVVS VLICGHVFHA ECLESMTPEF NKYDPACPIC TFGEKQALKM SEKALKSQMD LKARKRFRNR VVDSDFSCNL ALFDRQKSGG HGGRRLKMSS
401: SSSSMKSSSG KPFLLRHFSF GLKGSKSFSE SPSTRKKGFF WTRSSKE

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.