Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g007610.2.1 | Tomato | nucleus | 97.88 | 97.47 |
| PGSC0003DMT400020268 | Potato | nucleus | 36.86 | 38.67 |
| VIT_11s0118g00330.t01 | Wine grape | nucleus | 27.97 | 26.83 |
| KRH03610 | Soybean | plastid | 13.56 | 26.23 |
| KRH20198 | Soybean | nucleus | 15.68 | 24.67 |
| PGSC0003DMT400047431 | Potato | nucleus, plastid | 18.64 | 10.86 |
| PGSC0003DMT400066093 | Potato | nucleus | 17.8 | 10.07 |
| PGSC0003DMT400089080 | Potato | nucleus | 19.07 | 10.07 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 2.54 | 5.45 |
Protein Annotations
| EntrezGene:102579155 | Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1D0Z0 | PFAM:PF00097 | EnsemblPlantsGene:PGSC0003DMG400030714 | PGSC:PGSC0003DMG400030714 |
| EnsemblPlants:PGSC0003DMT400078932 | PFscan:PS50089 | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF6 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000296A9C1 | RefSeq:XP_006359495.1 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400030714]
Coordinates
chr7:+:3533476..3537441
Molecular Weight (calculated)
26037.9 Da
IEP (calculated)
9.061
GRAVY (calculated)
-0.610
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRKRRADL NKTPPPADLM PPSPGMDALS KQKFSHQVDS SGIKSFLTIA GDIMDGPVKV TQGQQSSIVH RRNIDLLKSL RHPRHYGRHY SRRRSASNAE
101: ASASHGGYTP SYDEKWSLKM ASKCSTDSGH DTDNRQKTVH RTEGVPSSSL ATRVMSSDAG KLFCVLCNKF LKKEPYIVLE NSLPIGETSI VAVLACGHLY
201: HADCLEQRTN REDRQDPPCP ICLGLVSHVD ASVELD
101: ASASHGGYTP SYDEKWSLKM ASKCSTDSGH DTDNRQKTVH RTEGVPSSSL ATRVMSSDAG KLFCVLCNKF LKKEPYIVLE NSLPIGETSI VAVLACGHLY
201: HADCLEQRTN REDRQDPPCP ICLGLVSHVD ASVELD
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.