Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03610 | Soybean | plastid | 35.33 | 43.44 |
| VIT_11s0118g00330.t01 | Wine grape | nucleus | 38.0 | 23.17 |
| PGSC0003DMT400020268 | Potato | nucleus | 30.67 | 20.44 |
| Solyc12g009830.1.1 | Tomato | nucleus | 30.0 | 20.27 |
| PGSC0003DMT400078932 | Potato | nucleus | 24.67 | 15.68 |
| Solyc07g007610.2.1 | Tomato | nucleus | 24.67 | 15.61 |
| KRH51797 | Soybean | nucleus | 28.67 | 9.95 |
| KRH61121 | Soybean | plastid | 28.67 | 9.71 |
| KRH60799 | Soybean | nucleus, plastid | 28.0 | 9.66 |
| KRH51493 | Soybean | nucleus | 27.33 | 9.43 |
| KRH27444 | Soybean | nucleus, plastid | 26.67 | 9.26 |
| KRH74897 | Soybean | nucleus | 22.67 | 9.16 |
| KRH20799 | Soybean | nucleus | 26.0 | 8.86 |
| KRH05863 | Soybean | nucleus | 25.33 | 8.76 |
| KRH15146 | Soybean | nucleus | 24.67 | 8.53 |
| KRH70752 | Soybean | nucleus | 22.0 | 7.97 |
Protein Annotations
| EMBL:ACUP02008247 | EnsemblPlants:KRH20198 | EnsemblPlantsGene:GLYMA_13G162700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF6 | PFscan:PS50089 | ProteinID:KRH20196.1 |
| ProteinID:KRH20197.1 | ProteinID:KRH20198 | ProteinID:KRH20198.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0002968D7A | UniProt:K7M061 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:27796825..27800728
Molecular Weight (calculated)
16953.1 Da
IEP (calculated)
8.088
GRAVY (calculated)
-0.536
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLPNTHQSM ANHHESLGGS VFLKRSRHYY DNQYSRHTST NHTNASSSRD KEYREKVFLR PERIQSNSLG MDAISPNIAK MVCGICEKLL SQKNNFLGSS
101: MSCELSAVAV LVCGHVYHAN CLEQRTPFEE LHDPTCPVCA SLFLQDHVNK
101: MSCELSAVAV LVCGHVYHAN CLEQRTPFEE LHDPTCPVCA SLFLQDHVNK
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.