CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20799	Soybean	nucleus	92.36	90.68
KRH60799	Soybean	nucleus, plastid	71.3	70.8
KRH51493	Soybean	nucleus	70.83	70.34
VIT_03s0038g04400.t01	Wine grape	nucleus	62.04	58.9
VIT_04s0079g00570.t01	Wine grape	cytosol	15.28	53.23
PGSC0003DMT400066093	Potato	nucleus	48.15	49.88
Solyc01g109910.2.1	Tomato	nucleus	52.55	49.35
Solyc10g054030.1.1	Tomato	nucleus	47.45	49.28
PGSC0003DMT400028504	Potato	cytosol, plastid	12.5	49.09
PGSC0003DMT400089080	Potato	nucleus	50.69	48.99
CDY13812	Canola	cytosol, nucleus, peroxisome	45.14	48.87
Bra031193.1-P	Field mustard	nucleus	45.14	47.33
AT2G21500.2	Thale cress	nucleus	46.06	47.27
KRH51797	Soybean	nucleus	45.14	45.14
KRH61121	Soybean	plastid	46.06	44.92
AT4G39140.3	Thale cress	nucleus	43.98	44.29
KRH05863	Soybean	nucleus	44.44	44.24
CDY41965	Canola	nucleus	43.06	43.97
CDX82036	Canola	nucleus	40.74	43.56
KRH15146	Soybean	nucleus	43.75	43.55
CDY42611	Canola	nucleus	42.13	43.33
Bra011873.1-P	Field mustard	nucleus	43.29	43.19
CDY12123	Canola	nucleus	41.44	42.42
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	36.34	39.25
GSMUA_Achr6P08950_001	Banana	nucleus	37.96	38.95
CDX72716	Canola	nucleus	34.95	38.72
Bra010702.1-P	Field mustard	nucleus	35.42	37.05
CDX90314	Canola	nucleus	35.19	36.72
EES00516	Sorghum	cytosol	36.11	35.94
HORVU3Hr1G036290.3	Barley	cytosol	35.65	35.9
TraesCS3B01G208100.1	Wheat	cytosol	35.42	35.75
TraesCS3A01G176900.1	Wheat	cytosol	35.42	35.75
TraesCS3D01G183700.1	Wheat	cytosol	35.19	35.6
TraesCS3D01G183800.1	Wheat	plastid	35.19	35.51
HORVU3Hr1G036310.2	Barley	plastid	35.19	35.43
Os01t0261100-01	Rice	cytosol	35.19	35.27
TraesCS3A01G176600.1	Wheat	plastid	34.95	35.2
TraesCS3B01G208200.1	Wheat	plastid	34.95	35.2
Zm00001d008306_P012	Maize	cytosol	35.88	34.99
VIT_04s0079g00560.t01	Wine grape	cytosol	12.5	34.84
GSMUA_Achr4P24550_001	Banana	nucleus	33.56	34.04
Bra033599.1-P	Field mustard	nucleus	31.25	34.01
OQU86641	Sorghum	nucleus	32.41	32.71
Zm00001d040317_P005	Maize	cytosol	30.56	28.82
GSMUA_Achr10P...	Banana	nucleus	30.32	28.48
KRH20198	Soybean	nucleus	9.26	26.67
KRH03610	Soybean	plastid	6.02	21.31
KRH70752	Soybean	nucleus	19.21	20.05
KRH74897	Soybean	nucleus	17.13	19.95

Protein Annotations

EntrezGene:100790241	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02007805	EnsemblPlantsGene:GLYMA_12G235700	UniProt:I1LVB7
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH27444	ProteinID:KRH27444	ProteinID:KRH27444.1	ProteinID:KRH27445.1
ProteinID:KRH27446.1	PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233D010	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:39465757..39471149

Molecular Weight (calculated)

47970.8 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.706

Length

432 amino acids

Sequence
(BLAST)

001: MGAVCCVAAK DKTIQSASPS EILHRNIRHS PTWNFRWDHR GRVAGEDTAV TWFSNDISGN NGLENKNESS YVSEDGDPLQ NYQIQRNRLQ KSPISEGTAR
101: NVINSSSDQT ISRNVSIKVS IEQVKELAES STLSCPYPAK LPHSLPSTSL SVSPLQSQSH PLPSSSTPSR WPCHSPGLQL SRQVSDSLIL GFKTPSNFYV
201: SEERPVFPSW SNESGTHSQG GSSDNWSRPG FSELTSTSLK ERWSFDSESF GFNCERPVRS SSRFSNSPVD LQTCGVCSKL LTEKSSWGTQ KIIASNDLSV
301: VSVLICGHVY HAECLESLTS EVNKYDPSCP VCTFGEKYTL KLSEKALKAE MDLKAKNKKS SDIDDSVLYE HFREKGHHGK GPRINSCSSG RKSNGKPFLR
401: RHFSFGSRST KSMLDNQPTR KKGFFWAKSH KE

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.