Factsheet for TraesCS3A01G176900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G240200.1
TraesCS2B01G257800.1
TraesCS2D01G237900.1
TraesCS6A01G251400.1
TraesCS6A01G274500.1
TraesCS6B01G273900.1
TraesCS6B01G302000.1
TraesCS6D01G233200.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G19680.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G19680.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G75400.1	TraesCS2A01G240200.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS2B01G257800.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS2D01G237900.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G75400.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G75400.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G183700.1	Wheat	cytosol	97.43	97.66
TraesCS3B01G208100.1	Wheat	cytosol	97.2	97.2
HORVU3Hr1G036290.3	Barley	cytosol	95.09	94.87
TraesCS3A01G176600.1	Wheat	plastid	71.03	70.86
OQU86641	Sorghum	nucleus	64.72	64.72
GSMUA_Achr4P24550_001	Banana	nucleus	46.73	46.95
VIT_03s0038g04400.t01	Wine grape	nucleus	40.65	38.24
VIT_18s0001g13060.t01	Wine grape	nucleus	39.49	38.15
KRH60799	Soybean	nucleus, plastid	38.55	37.93
KRH51493	Soybean	nucleus	38.55	37.93
KRH05863	Soybean	nucleus	38.32	37.79
KRH15146	Soybean	nucleus	38.08	37.56
PGSC0003DMT400066093	Potato	nucleus	35.75	36.69
KRH51797	Soybean	nucleus	36.92	36.57
Solyc10g054030.1.1	Tomato	nucleus	35.51	36.54
KRH20799	Soybean	nucleus	37.38	36.36
KRH61121	Soybean	plastid	37.15	35.89
Solyc01g109910.2.1	Tomato	nucleus	38.55	35.87
KRH27444	Soybean	nucleus, plastid	35.75	35.42
PGSC0003DMT400089080	Potato	nucleus	36.45	34.9
VIT_04s0079g00570.t01	Wine grape	cytosol	9.81	33.87
PGSC0003DMT400028504	Potato	cytosol, plastid	8.41	32.73
AT1G75400.1	Thale cress	plastid	34.58	32.53
CDY47525	Canola	nucleus, plastid	34.81	32.18
CDY39030	Canola	nucleus, plastid	15.89	31.78
CDY69665	Canola	nucleus, plastid	34.11	31.47
Bra003754.1-P	Field mustard	nucleus, plastid	15.19	31.4
CDX68130	Canola	nucleus, plastid	15.19	31.4
Bra015846.1-P	Field mustard	nucleus	34.58	29.9
CDY13812	Canola	cytosol, nucleus, peroxisome	27.8	29.82
AT2G21500.2	Thale cress	nucleus	29.21	29.69
AT4G39140.3	Thale cress	nucleus	29.67	29.6
AT1G19680.1	Thale cress	nucleus	30.14	29.05
Bra031193.1-P	Field mustard	nucleus	27.8	28.88
CDX82036	Canola	nucleus	26.87	28.47
CDY41965	Canola	nucleus	27.8	28.13
CDY42611	Canola	nucleus	27.57	28.1
CDY12123	Canola	nucleus	27.57	27.96
Bra008196.1-P	Field mustard	cytosol	15.42	27.73
Bra011873.1-P	Field mustard	nucleus	27.8	27.48
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	25.23	27.0
CDX72716	Canola	nucleus	24.53	26.92
Bra010702.1-P	Field mustard	nucleus	25.93	26.88
CDX90314	Canola	nucleus	25.93	26.81
Bra033599.1-P	Field mustard	nucleus	24.77	26.7
VIT_04s0079g00560.t01	Wine grape	cytosol	8.18	22.58
TraesCS6A01G305100.2	Wheat	nucleus	16.59	15.37

Protein Annotations

EnsemblPlants:TraesCS3A01G176900.1	EnsemblPlantsGene:TraesCS3A01G176900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFscan:PS50089	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:198489491..198494024

Molecular Weight (calculated)

46860.9 Da

IEP (calculated)

10.071

GRAVY (calculated)

-0.747

Length

428 amino acids

Sequence
(BLAST)

001: MGANCCIAAK QRPEPSVASV EVSAYRTRHS PSWSFRWDNR THIEDIMENA ALFSNHSSGN IRPELKSGSI APTEGHPNED NLPDVFRGVK CQKPDKKMEA
101: SKRSKAGLQA VQSTASNSPP EAKSCKSSDM VNVASDIKTS KSLPSTPPLV SRTDPSSSRC HSLHVDSFSM RKARRSPGHQ LCRQISDSKI PSLKSFSESS
201: YAGGRPSSSM LSTCSNDPFG GGSQHGGSSD GWSTRTFSDL VASSQRERWS VDSELFGSIS SKIARPNDSH ATALSPDEGI CKLCSKLLKE RSTWSAHDLG
301: VVAVLFCGHA YHANCLDSTT SECEKYDPPC PVCTHGEKGA AKLFGKLDSK IKSRKSKNVI LDTDIDRSSK HKKRSMREPR LGTSSSMKDS FRRPFLKRHF
401: SIGSRPPRSV LGSEPTGKKG FWARHWRE

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.