CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92969
CDX94878
CDY08148
CDY35484
CDY36901
CDY40829
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75400.1	CDX92969	AT3G22960.1	21798944
AT1G75400.1	CDX94878	AT3G22960.1	21798944
AT1G75400.1	CDY35484	AT3G22960.1	21798944
AT1G75400.1	CDY40829	AT3G22960.1	21798944
AT1G75400.1	CDY36901	AT3G48150.1	21798944
AT1G75400.1	CDY44976	AT3G48150.1	21798944
AT1G75400.1	CDY58069	AT3G48150.1	21798944
AT1G75400.1	CDY58070	AT3G48150.1	21798944
AT1G75400.1	CDY70805	AT3G48150.1	21798944
AT1G75400.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47525	Canola	nucleus, plastid	98.28	98.49
Bra015846.1-P	Field mustard	nucleus	97.63	91.52
AT1G75400.1	Thale cress	plastid	83.19	84.84
CDX68130	Canola	nucleus, plastid	26.51	59.42
VIT_18s0001g13060.t01	Wine grape	nucleus	50.22	52.6
KRH05863	Soybean	nucleus	48.06	51.38
KRH15146	Soybean	nucleus	46.55	49.77
CDY39030	Canola	nucleus, plastid	22.84	49.53
KRH51797	Soybean	nucleus	45.69	49.07
KRH61121	Soybean	plastid	46.77	48.98
CDY13812	Canola	cytosol, nucleus, peroxisome	32.54	37.84
CDX82036	Canola	nucleus	31.68	36.39
EES00516	Sorghum	cytosol	33.62	35.94
Os01t0261100-01	Rice	cytosol	33.19	35.73
Zm00001d008306_P012	Maize	cytosol	32.97	34.54
TraesCS3B01G208100.1	Wheat	cytosol	31.68	34.35
CDX90314	Canola	nucleus	30.6	34.3
GSMUA_Achr6P08950_001	Banana	nucleus	31.03	34.2
TraesCS3A01G176900.1	Wheat	cytosol	31.47	34.11
TraesCS3B01G208200.1	Wheat	plastid	31.47	34.03
HORVU3Hr1G036290.3	Barley	cytosol	31.25	33.8
HORVU3Hr1G036310.2	Barley	plastid	31.25	33.8
TraesCS3D01G183700.1	Wheat	cytosol	31.03	33.72
TraesCS3A01G176600.1	Wheat	plastid	31.03	33.57
TraesCS3D01G183800.1	Wheat	plastid	30.82	33.41
CDY42611	Canola	nucleus	30.17	33.33
GSMUA_Achr4P24550_001	Banana	nucleus	29.74	32.39
CDY12123	Canola	nucleus	29.31	32.23
CDX72716	Canola	nucleus	26.94	32.05
CDY41965	Canola	nucleus	28.88	31.68
Zm00001d040317_P005	Maize	cytosol	31.03	31.44
OQU86641	Sorghum	nucleus	28.66	31.07
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	26.29	30.5
GSMUA_Achr10P...	Banana	nucleus	29.09	29.35
CDY33767	Canola	nucleus, plastid	13.15	19.37
CDY49106	Canola	plastid	13.58	18.58
CDX81616	Canola	nucleus, plastid	12.93	17.86
CDY54049	Canola	plastid	13.79	16.41
CDY54050	Canola	plastid	13.58	16.2
CDY38501	Canola	nucleus	12.72	15.53

Protein Annotations

EnsemblPlants:CDY69665	EnsemblPlantsGene:GSBRNA2T00091448001	Gene3D:3.30.40.10	GO:A0A078JT95	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF8	PFscan:PS50089	ProteinID:CDY69665
ProteinID:CDY69665.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE281A	UniProt:A0A078JT95
MapMan:35.2	:	:	:	:	:

Description

BnaCnng64660DBnaCnng64660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT95]

Coordinates

chrLK039993:+:1447..3787

Molecular Weight (calculated)

50339.8 Da

IEP (calculated)

9.784

GRAVY (calculated)

-0.651

Length

464 amino acids

Sequence
(BLAST)

001: MGSVCCVAVK DRRKVPPPPS SSGHHHHAAA GGGASLHRNS ACSPQWSFRR DVNRRRVADE IEGSPYYSRE GLSMDKTSSL GSEMGTRSEG GTPPPDGTPF
101: LKSGAPEMGS NSMMVPPSSD SSLASHDPIE VKSFAASPSI VPSALSKPLF SSPSLSTPVC DLSSAHTRLL PPKSTPSRRA RRSPGHQLFR QVSDSQILGF
201: KSPNNNYSVS EGRSSFKLST CSNDFANGSH YASSEGGWSL NTFSELVAYS QRERWSFDSE HLGSGRRKLS GGGSSRFSFS PSVVVEQQNC GACSKLLTER
301: SSVANFELPI AAVLACGHVY HAECLETMTT EIEKYDPACP ICTIGEKRVA KITRKALKAE AEAKAKHYKR CKNRVVDSYG ESECDEFMFQ KTGKREGKAL
401: KMEPSSSSKG PSKSFLKWHF ASLSSKWSNN RSSKDSALKK GFWSTHRNNR SSSSIEGLNQ TSQL

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.