CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019673.1-P	Field mustard	nucleus, plastid	94.1	94.1
CDY33767	Canola	nucleus, plastid	56.05	60.32
CDX81616	Canola	nucleus, plastid	54.87	55.36
Solyc05g007820.2.1	Tomato	nucleus	26.55	35.43
KRH74897	Soybean	nucleus	32.45	29.65
PGSC0003DMT400047431	Potato	nucleus, plastid	34.81	29.14
KRH70752	Soybean	nucleus	34.81	28.5
Os10t0406200-01	Rice	nucleus	28.61	22.4
KXG38574	Sorghum	plastid	28.02	22.3
CDY39030	Canola	nucleus, plastid	12.98	20.56
GSMUA_Achr3P01890_001	Banana	nucleus	31.56	20.54
CDX68130	Canola	nucleus, plastid	11.5	18.84
CDY13812	Canola	cytosol, nucleus, peroxisome	22.12	18.8
CDX82036	Canola	nucleus	21.83	18.32
CDY54049	Canola	plastid	18.88	16.41
CDY38501	Canola	nucleus	18.29	16.32
CDY42611	Canola	nucleus	20.06	16.19
CDY54050	Canola	plastid	18.29	15.94
CDY41965	Canola	nucleus	19.76	15.84
CDX90314	Canola	nucleus	18.88	15.46
CDX72716	Canola	nucleus	17.7	15.38
CDY12123	Canola	nucleus	18.88	15.17
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	17.11	14.5
Zm00001d014199_P003	Maize	plastid	27.43	14.2
CDY47525	Canola	nucleus, plastid	18.88	13.82
CDY69665	Canola	nucleus, plastid	18.58	13.58

Protein Annotations

EnsemblPlants:CDY49106	EnsemblPlantsGene:GSBRNA2T00092338001	Gene3D:3.30.40.10	GO:A0A078IGI2	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	PFscan:PS50089	ProteinID:CDY49106
ProteinID:CDY49106.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE21CC	UniProt:A0A078IGI2
MapMan:35.2	:	:	:	:	:

Description

BnaA06g09000DBnaA06g09000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGI2]

Coordinates

chrLK032810:-:97588..99231

Molecular Weight (calculated)

37472.5 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.725

Length

339 amino acids

Sequence
(BLAST)

001: MGSLCCVAAK SDKSDSSASR DVSFGTHEPY WRTNTSFSPP SSRWDVPGLT DGISLYGSSS STSSNANLLP TPNLSQTLHW NDFESATRRD QALKQLPSCS
101: DIGDSEPNRN FSNRRFFLSK PVHPIHSGNA RDVTSDSADA CSWSSGRTSS IDSMDVVLDW DNHNSTKSQR AASSTFVCGL CNRYISQKPP CGSRSIVRNR
201: DMPVTGVLPC QHVFHAECLD QSTPKAHRND PPCPVCTKQE GEQDKSHNVV FRLKPFCEDG PSSTRQWACA QVGDCVESAV NVPPRNTMIM INRNRMRKSL
301: SLRGSSSKDS PRKVKRRGSF MENFTNQVSF VHSRGKEKV

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.