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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • cytosol 1
  • nucleus 3
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX86457
CDY41709
CDY58518

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003754.1-P Field mustard nucleus, plastid 100.0 100.0
CDY39030 Canola nucleus, plastid 34.78 33.64
CDY47525 Canola nucleus, plastid 59.9 26.78
CDY69665 Canola nucleus, plastid 59.42 26.51
AT1G19680.1 Thale cress nucleus 48.31 22.52
VIT_18s0001g13060.t01 Wine grape nucleus 44.93 20.99
KRH05863 Soybean nucleus 41.06 19.59
KRH15146 Soybean nucleus 41.06 19.59
KRH51797 Soybean nucleus 39.61 18.98
KRH61121 Soybean plastid 39.61 18.51
CDX72716 Canola nucleus 33.33 17.69
CDX82036 Canola nucleus 34.3 17.57
CDY13812 Canola cytosol, nucleus, peroxisome 33.82 17.54
CDY42611 Canola nucleus 33.82 16.67
CDY56767 Canola cytosol, nucleus, peroxisome, plastid 31.88 16.5
Os01t0261100-01 Rice cytosol 34.3 16.47
EES00516 Sorghum cytosol 34.3 16.36
CDY41965 Canola nucleus 33.33 16.31
CDY12123 Canola nucleus 32.85 16.11
CDX90314 Canola nucleus 31.88 15.94
Zm00001d008306_P012 Maize cytosol 33.82 15.8
TraesCS3B01G208100.1 Wheat cytosol 32.37 15.65
TraesCS3D01G183800.1 Wheat plastid 31.88 15.42
HORVU3Hr1G036310.2 Barley plastid 31.88 15.38
TraesCS3B01G208200.1 Wheat plastid 31.88 15.38
TraesCS3D01G183700.1 Wheat cytosol 31.4 15.22
OQU86641 Sorghum nucleus 31.4 15.19
TraesCS3A01G176900.1 Wheat cytosol 31.4 15.19
TraesCS3A01G176600.1 Wheat plastid 31.4 15.15
HORVU3Hr1G036290.3 Barley cytosol 30.92 14.92
GSMUA_Achr4P24550_001 Banana nucleus 30.43 14.79
GSMUA_Achr6P08950_001 Banana nucleus 29.47 14.49
GSMUA_Achr10P... Banana nucleus 27.54 12.39
Zm00001d040317_P005 Maize cytosol 26.09 11.79
CDY49106 Canola plastid 18.84 11.5
CDY33767 Canola nucleus, plastid 17.39 11.43
CDX81616 Canola nucleus, plastid 17.87 11.01
CDY54049 Canola plastid 14.49 7.69
CDY38501 Canola nucleus 14.01 7.63
CDY54050 Canola plastid 13.53 7.2
Protein Annotations
EnsemblPlants:CDX68130EnsemblPlantsGene:GSBRNA2T00099378001Gene3D:3.30.40.10GO:A0A078BU20InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR31150PANTHER:PTHR31150:SF8PFscan:PS50089ProteinID:CDX68130
ProteinID:CDX68130.1SEG:segSUPFAM:SSF57850UniParc:UPI00025415CFMapMan:35.2:
Description
BnaA07g21700D
Coordinates
chrLK031787:-:4043740..4044363
Molecular Weight (calculated)
23670.2 Da
IEP (calculated)
9.967
GRAVY (calculated)
-0.547
Length
207 amino acids
Sequence
(BLAST)
001: MLAYSQRDRW SFDSEHLGSS RRKLSGSSSS SRFSFSQSLV DQQICGACSK FEKSSVANFE RQIAAVLACG HVYHAECLET MTTEIEKYDL ACHVCTIEEK
101: QVTKITRKAL KAEAKHYRRC INRVVDSYRE FMFQKTEGKA LKMEPSFSSK GPSKSFLKWR LASISSKLSK LSSKDSALKK GFWSRHRSSS NIEVKDPYTL
201: RDFEMVL
Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.