Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 3
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G19680.1 | CDX86457 | AT3G27960.1 | 21798944 |
AT1G19680.1 | CDY58518 | AT3G27960.1 | 21798944 |
AT1G19680.1 | CDY41709 | AT5G22355.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra003754.1-P | Field mustard | nucleus, plastid | 100.0 | 100.0 |
CDY39030 | Canola | nucleus, plastid | 34.78 | 33.64 |
CDY47525 | Canola | nucleus, plastid | 59.9 | 26.78 |
CDY69665 | Canola | nucleus, plastid | 59.42 | 26.51 |
AT1G19680.1 | Thale cress | nucleus | 48.31 | 22.52 |
VIT_18s0001g13060.t01 | Wine grape | nucleus | 44.93 | 20.99 |
KRH05863 | Soybean | nucleus | 41.06 | 19.59 |
KRH15146 | Soybean | nucleus | 41.06 | 19.59 |
KRH51797 | Soybean | nucleus | 39.61 | 18.98 |
KRH61121 | Soybean | plastid | 39.61 | 18.51 |
CDX72716 | Canola | nucleus | 33.33 | 17.69 |
CDX82036 | Canola | nucleus | 34.3 | 17.57 |
CDY13812 | Canola | cytosol, nucleus, peroxisome | 33.82 | 17.54 |
CDY42611 | Canola | nucleus | 33.82 | 16.67 |
CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 31.88 | 16.5 |
Os01t0261100-01 | Rice | cytosol | 34.3 | 16.47 |
EES00516 | Sorghum | cytosol | 34.3 | 16.36 |
CDY41965 | Canola | nucleus | 33.33 | 16.31 |
CDY12123 | Canola | nucleus | 32.85 | 16.11 |
CDX90314 | Canola | nucleus | 31.88 | 15.94 |
Zm00001d008306_P012 | Maize | cytosol | 33.82 | 15.8 |
TraesCS3B01G208100.1 | Wheat | cytosol | 32.37 | 15.65 |
TraesCS3D01G183800.1 | Wheat | plastid | 31.88 | 15.42 |
HORVU3Hr1G036310.2 | Barley | plastid | 31.88 | 15.38 |
TraesCS3B01G208200.1 | Wheat | plastid | 31.88 | 15.38 |
TraesCS3D01G183700.1 | Wheat | cytosol | 31.4 | 15.22 |
OQU86641 | Sorghum | nucleus | 31.4 | 15.19 |
TraesCS3A01G176900.1 | Wheat | cytosol | 31.4 | 15.19 |
TraesCS3A01G176600.1 | Wheat | plastid | 31.4 | 15.15 |
HORVU3Hr1G036290.3 | Barley | cytosol | 30.92 | 14.92 |
GSMUA_Achr4P24550_001 | Banana | nucleus | 30.43 | 14.79 |
GSMUA_Achr6P08950_001 | Banana | nucleus | 29.47 | 14.49 |
GSMUA_Achr10P... | Banana | nucleus | 27.54 | 12.39 |
Zm00001d040317_P005 | Maize | cytosol | 26.09 | 11.79 |
CDY49106 | Canola | plastid | 18.84 | 11.5 |
CDY33767 | Canola | nucleus, plastid | 17.39 | 11.43 |
CDX81616 | Canola | nucleus, plastid | 17.87 | 11.01 |
CDY54049 | Canola | plastid | 14.49 | 7.69 |
CDY38501 | Canola | nucleus | 14.01 | 7.63 |
CDY54050 | Canola | plastid | 13.53 | 7.2 |
Protein Annotations
EnsemblPlants:CDX68130 | EnsemblPlantsGene:GSBRNA2T00099378001 | Gene3D:3.30.40.10 | GO:A0A078BU20 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF8 | PFscan:PS50089 | ProteinID:CDX68130 |
ProteinID:CDX68130.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI00025415CF | MapMan:35.2 | : |
Description
BnaA07g21700D
Coordinates
chrLK031787:-:4043740..4044363
Molecular Weight (calculated)
23670.2 Da
IEP (calculated)
9.967
GRAVY (calculated)
-0.547
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAYSQRDRW SFDSEHLGSS RRKLSGSSSS SRFSFSQSLV DQQICGACSK FEKSSVANFE RQIAAVLACG HVYHAECLET MTTEIEKYDL ACHVCTIEEK
101: QVTKITRKAL KAEAKHYRRC INRVVDSYRE FMFQKTEGKA LKMEPSFSSK GPSKSFLKWR LASISSKLSK LSSKDSALKK GFWSRHRSSS NIEVKDPYTL
201: RDFEMVL
101: QVTKITRKAL KAEAKHYRRC INRVVDSYRE FMFQKTEGKA LKMEPSFSSK GPSKSFLKWR LASISSKLSK LSSKDSALKK GFWSRHRSSS NIEVKDPYTL
201: RDFEMVL
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.