CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026851.1-P	Field mustard	nucleus, plastid	87.8	93.65
CDY33767	Canola	nucleus, plastid	87.8	93.65
AT1G14180.1	Thale cress	nucleus	64.29	62.07
CDY49106	Canola	plastid	55.36	54.87
Solyc05g007820.2.1	Tomato	nucleus	25.6	33.86
KRH74897	Soybean	nucleus	35.71	32.34
KRH70752	Soybean	nucleus	39.29	31.88
PGSC0003DMT400047431	Potato	nucleus, plastid	36.31	30.12
Os10t0406200-01	Rice	nucleus	30.06	23.33
KXG38574	Sorghum	plastid	28.87	22.77
GSMUA_Achr3P01890_001	Banana	nucleus	33.04	21.31
CDY39030	Canola	nucleus, plastid	12.2	19.16
CDX68130	Canola	nucleus, plastid	11.01	17.87
CDX82036	Canola	nucleus	20.24	16.83
CDY13812	Canola	cytosol, nucleus, peroxisome	19.94	16.79
CDY38501	Canola	nucleus	17.86	15.79
CDY54049	Canola	plastid	17.86	15.38
CDY42611	Canola	nucleus	19.05	15.24
CDY54050	Canola	plastid	17.56	15.17
CDY41965	Canola	nucleus	19.05	15.13
Zm00001d014199_P003	Maize	plastid	29.46	15.11
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	17.56	14.75
CDX72716	Canola	nucleus	16.96	14.62
CDX90314	Canola	nucleus	17.56	14.25
CDY12123	Canola	nucleus	17.26	13.74
CDY47525	Canola	nucleus, plastid	18.15	13.17
CDY69665	Canola	nucleus, plastid	17.86	12.93

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078CWT0	EnsemblPlants:CDX81616	ProteinID:CDX81616	ProteinID:CDX81616.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00136526001	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF00097	PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0004EEA444	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:

Description

BnaC08g39850D

Coordinates

chrLK031826:+:32427..33577

Molecular Weight (calculated)

36995.1 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.710

Length

336 amino acids

Sequence
(BLAST)

001: MGSLCCVAAK SDRSNSPSHD FSFGPHDPYW RTNSSFSPPS SRWDLRGLTD GVSFYGSSTS SNANVLRSPD LSQTLHWTPS DFESATRRDQ TPKRFFLSKP
101: VHPILHPSDN ARETTSDSAD ACSWSSGTPS SVDSTDVPEP LLDAQRVVAS STFKCGLCDR YISQKSPWGS RSIMRNRDMP VTGVLPCQHV FHAECLDQST
201: PKTNSNDPPC PVCIKQEGEH SNKPHNIGLR LKPLCEDGTS TRQWGCAQAG DCVESAVNVP PRNTMLMINR NRIRKNLSLS GNSSKDSPRK IKKSNSFAME
301: NQVSLVHSSG ERQEREGSMV AGNRNIRFGR CVSKCV

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.