CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68463
CDX70521
CDX78539
CDY02176
CDY23090
CDY24170
CDY36943
CDY60454
CDY67732
CDY70544
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18260.1	CDY24170	AT3G47620.1	21798944
AT5G18260.1	CDY36943	AT3G47620.1	21798944
AT5G18260.1	CDX68463	AT3G48550.1	21798944
AT5G18260.1	CDY60454	AT3G48550.1	21798944
AT5G18260.1	CDY70544	AT3G48550.1	21798944
AT5G18260.1	CDX70521	AT5G13810.1	21798944
AT5G18260.1	CDX78539	AT5G13810.1	21798944
AT5G18260.1	CDY67732	AT5G13810.1	21798944
AT5G18260.1	CDY70634	AT5G13810.1	21798944
AT5G18260.1	CDY02176	AT5G61010.1	21798944
AT5G18260.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54049	Canola	plastid	96.92	96.67
Bra002147.1-P	Field mustard	nucleus	71.21	72.14
CDY38501	Canola	nucleus	47.56	48.68
AT5G18260.1	Thale cress	nucleus, plastid	36.25	44.06
CDY33767	Canola	nucleus, plastid	14.91	18.41
CDY49106	Canola	plastid	15.94	18.29
CDX81616	Canola	nucleus, plastid	15.17	17.56
CDY39030	Canola	nucleus, plastid	9.0	16.36
CDY13812	Canola	cytosol, nucleus, peroxisome	16.45	16.04
CDX90314	Canola	nucleus	16.97	15.94
CDY41965	Canola	nucleus	16.97	15.6
CDY12123	Canola	nucleus	16.45	15.17
CDY42611	Canola	nucleus	16.2	15.0
CDX72716	Canola	nucleus	14.65	14.62
CDX82036	Canola	nucleus	14.14	13.61
CDY69665	Canola	nucleus, plastid	16.2	13.58
CDX68130	Canola	nucleus, plastid	7.2	13.53
CDY47525	Canola	nucleus, plastid	15.94	13.39
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	13.62	13.25

Protein Annotations

EnsemblPlants:CDY54050	EnsemblPlantsGene:GSBRNA2T00012043001	Gene3D:3.30.40.10	GO:A0A078ISJ0	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF9	PFscan:PS50089	ProteinID:CDY54050
ProteinID:CDY54050.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EEDB68	UniProt:A0A078ISJ0	MapMan:35.2

Description

BnaC09g54220DBnaC09g54220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISJ0]

Coordinates

chrLK033270:-:26898..28881

Molecular Weight (calculated)

42570.4 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.577

Length

389 amino acids

Sequence
(BLAST)

001: MSSETAVTSS VPVLISFKTG ALCCIVASRP LVTTKSPPRS GRDVLPSRQD EALQWRTNLS FLPAVNTGDG LDQDTSDDES HRFGLYSSTS RQSETLESCF
101: QQSPRWASTS SASGGIEQDT VPITNNSKPQ CLDEEKSIDR ESTASFSSLL TLSEPTTASR IAPSKQPLSL AHCSYPRVFC NPVSDCENHE LHHPQEDAFT
201: DPVSSFMMST INHQGSQVEK ASSNSSNSTS SNDNTLLDVE RSNETQAANQ RLEPGSTTQA TQHRCGVCKK LLSQKSPWCS HKILRSGDMP AAGVFPCHHV
301: YHVECLDKVT PTSQTRDPSC PACSNTIGAI EHELIAPETL QQALRSLRRS HTALGSELLS TDNQTRQLRR RHKWEKLSCC LNISFLSSS

Best Arabidopsis Sequence Match ( AT5G18260.1 )
(BLAST)

001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FK45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.