Factsheet for Bra002147.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006216.1-P
Bra008801.1-P
Bra012987.1-P
Bra018049.1-P
Bra018126.1-P
Bra029904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18260.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G18260.1	Bra018049.1-P	AT3G48550.1	21798944
AT5G18260.1	Bra029904.1-P	AT3G48550.1	21798944
AT5G18260.1	Bra006216.1-P	AT5G13810.1	21798944
AT5G18260.1	Bra008801.1-P	AT5G13810.1	21798944
AT5G18260.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54050	Canola	plastid	72.14	71.21
CDY54049	Canola	plastid	69.27	68.21
AT5G18260.1	Thale cress	nucleus, plastid	35.68	42.81
Bra026851.1-P	Field mustard	nucleus, plastid	15.89	19.37
Bra019673.1-P	Field mustard	nucleus, plastid	16.93	19.17
Bra010702.1-P	Field mustard	nucleus	17.45	16.22
Bra011873.1-P	Field mustard	nucleus	16.93	15.01
Bra031193.1-P	Field mustard	nucleus	15.89	14.81
Bra008196.1-P	Field mustard	cytosol	9.11	14.71
Bra003754.1-P	Field mustard	nucleus, plastid	7.55	14.01
Bra033599.1-P	Field mustard	nucleus	14.06	13.6
Bra015846.1-P	Field mustard	nucleus	15.89	12.32

Protein Annotations

EnsemblPlants:Bra002147.1	EnsemblPlants:Bra002147.1-P	EnsemblPlantsGene:Bra002147	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF9	PFscan:PS50089	SEG:seg
SUPFAM:SSF57850	UniParc:UPI000254394F	UniProt:M4CD66	MapMan:35.2	:	:

Description

AT5G18260 (E=1e-090) | protein binding / zinc ion binding

Coordinates

chrA10:+:11271872..11273413

Molecular Weight (calculated)

42550.4 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.566

Length

384 amino acids

Sequence
(BLAST)

001: MSSETAVTSS VPVLISRSHC IEKITLLFAL VSIVWSIRRG RDVLPSRQDE EALQWRTNLS FSPAVYTRDG LEHDTSDDES HRFGLYSSTS RRSETLESCL
101: WASNSSASGG IEQDTVPITN NSKPQCLDEE KNIDRESTAS FSSLLKLSQP TTASRVTPSK QPLSHAHCSY PRVFCNPVSD CENPELHHPQ EDAFTDPVSS
201: FMTSTINNQG SQVEEASSNS SNSTSSNDNT LLDVERFNET QAANQRLEPG SVTQVTQHRC GVCKKLLSQK SPWCSHKILR SGDMPAAGVF PCHHVYHVEC
301: LDKVTPTSQT RDPSCPACSN TIGAIEHELI APETLQQALR SLRRSHTALG SELLSTDNQT RQLRRRHKWE KLSCCLNISF LSSS

Best Arabidopsis Sequence Match ( AT5G18260.1 )
(BLAST)

001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FK45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.