Factsheet for Bra015846.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra017974.1-P
Bra018081.1-P
Bra023780.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75400.1	Bra001896.1-P	AT3G22960.1	21798944
AT1G75400.1	Bra023780.1-P	AT3G22960.1	21798944
AT1G75400.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G75400.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G75400.1	Bra017974.1-P	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47525	Canola	nucleus, plastid	92.12	98.49
CDY69665	Canola	nucleus, plastid	91.52	97.63
AT1G75400.1	Thale cress	plastid	77.78	84.62
Bra003754.1-P	Field mustard	nucleus, plastid	25.25	60.39
VIT_18s0001g13060.t01	Wine grape	nucleus	47.68	53.27
KRH05863	Soybean	nucleus	45.05	51.38
KRH15146	Soybean	nucleus	43.64	49.77
KRH51797	Soybean	nucleus	43.23	49.54
KRH61121	Soybean	plastid	44.24	49.44
Bra008196.1-P	Field mustard	cytosol	22.02	45.8
Bra031193.1-P	Field mustard	nucleus	31.11	37.38
EES00516	Sorghum	cytosol	31.92	36.41
Os01t0261100-01	Rice	cytosol	31.52	36.19
Zm00001d008306_P012	Maize	cytosol	31.31	34.99
TraesCS3B01G208100.1	Wheat	cytosol	30.1	34.81
GSMUA_Achr6P08950_001	Banana	nucleus	29.49	34.68
TraesCS3A01G176900.1	Wheat	cytosol	29.9	34.58
TraesCS3B01G208200.1	Wheat	plastid	29.9	34.5
HORVU3Hr1G036290.3	Barley	cytosol	29.7	34.27
HORVU3Hr1G036310.2	Barley	plastid	29.7	34.27
TraesCS3D01G183700.1	Wheat	cytosol	29.49	34.19
TraesCS3A01G176600.1	Wheat	plastid	29.49	34.03
Bra010702.1-P	Field mustard	nucleus	28.28	33.9
TraesCS3D01G183800.1	Wheat	plastid	29.29	33.88
GSMUA_Achr4P24550_001	Banana	nucleus	28.08	32.63
OQU86641	Sorghum	nucleus	27.07	31.31
Zm00001d040317_P005	Maize	cytosol	28.89	31.22
Bra011873.1-P	Field mustard	nucleus	27.27	31.18
Bra033599.1-P	Field mustard	nucleus	24.85	30.98
GSMUA_Achr10P...	Banana	nucleus	27.68	29.78
Bra026851.1-P	Field mustard	nucleus, plastid	12.32	19.37
Bra019673.1-P	Field mustard	nucleus, plastid	12.93	18.88
Bra002147.1-P	Field mustard	nucleus	12.32	15.89

Protein Annotations

EnsemblPlants:Bra015846.1	EnsemblPlants:Bra015846.1-P	EnsemblPlantsGene:Bra015846	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF8	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002541F76	UniProt:M4DH69	MapMan:35.2	:

Description

AT1G75400 (E=2e-152) | protein binding / zinc ion binding

Coordinates

chrA07:+:20544190..20545998

Molecular Weight (calculated)

54008.3 Da

IEP (calculated)

10.045

GRAVY (calculated)

-0.626

Length

495 amino acids

Sequence
(BLAST)

001: MGSVCCVAVK DRRKVPPPPS SSGHHHHHAA AGASLHRNSA CSPQWSFRRD VNRRRVADEI EGSPYYSREG LSMDKTSSLG SERGTRSEGG TPPPDGTPFL
101: KSGAPEMGSN SMMVPPSSDS SLASHDPIEV KSFAASPSIV PSALSKPLFS SPSLSTPVCD LSSAHTRLLP PKSTPSRRAR RSPGHQLFRQ VSDSQILGFK
201: SPNNNYSVSE GRSSFKLSTC SNDFANGSHY ASSEGGWSLN TFSELVAYSQ RERWSFDSEH LGSGRRKLSG GGSSRFSFSP SVVVDQQNCG ACSKLLTERS
301: SVANFELPIA AVLACGHVYH AECLETMTTE IEKYDPACPI CTIGEKRVAK ITRKALKAEA EAKAKHYKRC KNRVVDSYGE SECDEFMFQK TGKREGKALK
401: MEPSSSSKGP SKSFLKWHFA SLSSKWSNNR SSKDSALKKG FWSRHRNNRS SSSIEVKASS SLCLFKNGLI VTNATHFRDL TRHLSFKETS QISGM

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.