Factsheet for Zm00001d040317_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d018961_P002
Zm00001d034443_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT1G19680.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT1G75400.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT1G75400.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT1G75400.1	Zm00001d017475_P002	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00516	Sorghum	cytosol	79.91	84.33
Zm00001d008306_P012	Maize	cytosol	75.98	78.56
HORVU3Hr1G036310.2	Barley	plastid	69.87	74.59
TraesCS3D01G183800.1	Wheat	plastid	69.43	74.3
TraesCS3B01G208200.1	Wheat	plastid	69.43	74.13
Os01t0261100-01	Rice	cytosol	69.65	74.01
TraesCS3A01G176600.1	Wheat	plastid	69.21	73.89
GSMUA_Achr4P24550_001	Banana	nucleus	41.27	44.37
VIT_03s0038g04400.t01	Wine grape	nucleus	34.93	35.16
VIT_18s0001g13060.t01	Wine grape	nucleus	33.62	34.76
VIT_04s0079g00570.t01	Wine grape	cytosol	9.39	34.68
KRH05863	Soybean	nucleus	32.75	34.56
KRH15146	Soybean	nucleus	32.1	33.87
KRH61121	Soybean	plastid	32.75	33.86
KRH51797	Soybean	nucleus	31.88	33.8
PGSC0003DMT400066093	Potato	nucleus	28.82	31.65
AT1G75400.1	Thale cress	plastid	31.44	31.65
Solyc10g054030.1.1	Tomato	nucleus	28.6	31.49
KRH20799	Soybean	nucleus	30.13	31.36
KRH51493	Soybean	nucleus	29.69	31.26
CDY69665	Canola	nucleus, plastid	31.44	31.03
PGSC0003DMT400028504	Potato	cytosol, plastid	7.42	30.91
CDY47525	Canola	nucleus, plastid	31.22	30.89
KRH60799	Soybean	nucleus, plastid	29.04	30.57
KRH27444	Soybean	nucleus, plastid	28.82	30.56
Solyc01g109910.2.1	Tomato	nucleus	30.13	30.0
CDY13812	Canola	cytosol, nucleus, peroxisome	25.98	29.82
PGSC0003DMT400089080	Potato	nucleus	28.38	29.08
Bra015846.1-P	Field mustard	nucleus	31.22	28.89
Bra031193.1-P	Field mustard	nucleus	25.76	28.64
AT2G21500.2	Thale cress	nucleus	26.2	28.5
AT1G19680.1	Thale cress	nucleus	27.07	27.93
CDY39030	Canola	nucleus, plastid	12.66	27.1
CDX82036	Canola	nucleus	23.8	26.98
Bra008196.1-P	Field mustard	cytosol	13.97	26.89
Bra003754.1-P	Field mustard	nucleus, plastid	11.79	26.09
CDX68130	Canola	nucleus, plastid	11.79	26.09
CDY42611	Canola	nucleus	23.58	25.71
AT4G39140.3	Thale cress	nucleus	23.8	25.41
CDY41965	Canola	nucleus	23.36	25.3
VIT_04s0079g00560.t01	Wine grape	cytosol	8.52	25.16
Bra011873.1-P	Field mustard	nucleus	23.58	24.94
Bra010702.1-P	Field mustard	nucleus	22.05	24.46
CDY12123	Canola	nucleus	22.27	24.17
CDX90314	Canola	nucleus	21.83	24.15
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	20.74	23.75
CDX72716	Canola	nucleus	19.87	23.33
Bra033599.1-P	Field mustard	nucleus	19.43	22.42
Zm00001d047558_P001	Maize	nucleus	17.03	16.99
Zm00001d028989_P002	Maize	endoplasmic reticulum, plasma membrane	13.97	13.91
Zm00001d014199_P003	Maize	plastid	15.5	10.84

Protein Annotations

EntrezGene:100382007	Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1D6MQ54	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM31154.1	PFAM:PF00097	PFscan:PS50089
PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0008459B44	EnsemblPlantsGene:Zm00001d040317
EnsemblPlants:Zm00001d040317_P005	EnsemblPlants:Zm00001d040317_T005	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING/U-box superfamily protein

Coordinates

chr3:+:37802079..37807763

Molecular Weight (calculated)

50151.9 Da

IEP (calculated)

9.305

GRAVY (calculated)

-0.683

Length

458 amino acids

Sequence
(BLAST)

001: MEGAQLLLEQ RAAKAQQGSR RGERRQWLGG VEFNMGANCC IAAKERTQPC ITPLEVSAYR NVRHSPSWSF RWDNRTHIED IMEIPTLFSN HSSGSIRPDT
101: KSGSIAPTEG FSNGNSLGTS PSNVSHGTKW HKSDKKMEAS KVTMADPRAD HPTASNSSLE AKLFRKSLDM SSVASDLKTS GSVPSTPPLV SRADPSSSRG
201: HSQPTDSDSM KKARRSPGYQ LYRQVSDSKI PSLRSLNEIS SPEGRPSSSM LSVCSNDLSA AGSYAESSDG WSMRTFSEMV ATSQRERWSL DSELLGSISS
301: KVTRTSASNS TTLPPEQEVC KLCLKLLKER STWNAQELAV VAVLLCGHVY HADCLDSITT EADKYDPPCP VCTHGEKCTV KLFGKLESKV KNKIPKNVAA
401: DINPDGNSNK HQKKGRREPR KGLREEVNSP ACKLTEFRLA QGLPSWRATN IFGSFSQP

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.