Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047558_P001 | Maize | nucleus | 58.48 | 58.61 |
| EER92330 | Sorghum | nucleus | 58.48 | 58.23 |
| Os03t0326300-01 | Rice | nucleus | 51.3 | 53.03 |
| TraesCS6A01G305100.2 | Wheat | nucleus | 50.87 | 50.65 |
| HORVU6Hr1G075350.1 | Barley | nucleus | 49.78 | 49.57 |
| TraesCS6D01G284300.1 | Wheat | nucleus | 49.13 | 49.02 |
| TraesCS6B01G333400.1 | Wheat | nucleus | 48.7 | 48.59 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 31.52 | 39.84 |
| GSMUA_Achr5P27760_001 | Banana | nucleus | 29.35 | 21.43 |
| Zm00001d008306_P012 | Maize | cytosol | 15.22 | 15.8 |
| Zm00001d040317_P005 | Maize | cytosol | 13.91 | 13.97 |
| Zm00001d014199_P003 | Maize | plastid | 17.39 | 12.21 |
Protein Annotations
| EnsemblPlants:Zm00001d028989_P002 | EnsemblPlants:Zm00001d028989_T002 | EnsemblPlantsGene:Zm00001d028989 | EntrezGene:100383259 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF9 | PFscan:PS50089 |
| ProteinID:ONL97542.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000842EF9E | UniProt:A0A1D6K199 | MapMan:35.2 |
Description
RING/U-box superfamily protein
Coordinates
chr1:-:53771917..53776759
Molecular Weight (calculated)
51103.0 Da
IEP (calculated)
9.243
GRAVY (calculated)
-0.418
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCPTEFMML LMITRHMFHH YHPIAKEAEV HLAVISTSII IILHLMEHFL TLGVQLTAFR PHAGHPLFKD LISVNSLPLQ EKQLRHSCVS RIPLISSCCI
101: VLTVALLIEP GSRPETSDYP QSSERPLTAT SSFSSASPFS ESSQLASSSK QAAPYLPRNH MGRRSFMSKP VYPLVFRNPV SESEACRMLE VSNAGRATPS
201: DDSQASPLWR RSLASPELKF HNALNELGKM EVSPERNTSS RREGFRWSNA SSYDFGYDGD AIDMSDHISI ESQRSPTSSV RFLKCGLCER FLCQKSPWTS
301: NRIVRNADMP VAAVLHCRHV FHADCLEEGT PKTEVHEPPC PLCTAPTDDE AHVSFSEPLH VALRSARRNL SLGSGAGGSN SSGARPPCSD RGLKRNHSAI
401: VPRRGGGGSL FRNRFKRQFP FKARIGKELF GGRVFSKVGS SSGQQDDHRQ QAPKRDRLMK
101: VLTVALLIEP GSRPETSDYP QSSERPLTAT SSFSSASPFS ESSQLASSSK QAAPYLPRNH MGRRSFMSKP VYPLVFRNPV SESEACRMLE VSNAGRATPS
201: DDSQASPLWR RSLASPELKF HNALNELGKM EVSPERNTSS RREGFRWSNA SSYDFGYDGD AIDMSDHISI ESQRSPTSSV RFLKCGLCER FLCQKSPWTS
301: NRIVRNADMP VAAVLHCRHV FHADCLEEGT PKTEVHEPPC PLCTAPTDDE AHVSFSEPLH VALRSARRNL SLGSGAGGSN SSGARPPCSD RGLKRNHSAI
401: VPRRGGGGSL FRNRFKRQFP FKARIGKELF GGRVFSKVGS SSGQQDDHRQ QAPKRDRLMK
001: MVLAVMDLPH HQMLMFFVVP TFLKLFIGHL TILNLLQEEI VKQLPGTSRN VGIGDSEPGR NSSSRRFFLS KPVHPILHPS DNVRDTASDS ADACSWSSGT
101: PSSIDSVDVP EPVLDWNNNS TKAQQVAASS TFKCGLCNRY LSQKSPWGSR SIVRNRDMPV TGVLSCQHVF HVECLDQSTP KIQRNDPLCP ICTKQEGEHF
201: KSNNIVPRLK PLYEDGPSSR PWGCAQAGDC VESAVNVPPK NTMMMINRNR IRKSLSLRGN SSKDFSRKMK RSNSVAMENL ANQVSLVHSR GKEKVSW
101: PSSIDSVDVP EPVLDWNNNS TKAQQVAASS TFKCGLCNRY LSQKSPWGSR SIVRNRDMPV TGVLSCQHVF HVECLDQSTP KIQRNDPLCP ICTKQEGEHF
201: KSNNIVPRLK PLYEDGPSSR PWGCAQAGDC VESAVNVPPK NTMMMINRNR IRKSLSLRGN SSKDFSRKMK RSNSVAMENL ANQVSLVHSR GKEKVSW
Arabidopsis Description
Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.