Factsheet for VIT_08s0007g07610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0326300-01	Rice	nucleus	40.11	32.81
EER92330	Sorghum	nucleus	40.66	32.03
TraesCS6A01G305100.2	Wheat	nucleus	40.66	32.03
HORVU6Hr1G075350.1	Barley	nucleus	40.38	31.82
TraesCS6D01G284300.1	Wheat	nucleus	40.11	31.67
Zm00001d028989_P002	Maize	endoplasmic reticulum, plasma membrane	39.84	31.52
TraesCS6B01G333400.1	Wheat	nucleus	39.84	31.45
Zm00001d047558_P001	Maize	nucleus	39.29	31.15
VIT_04s0079g00570.t01	Wine grape	cytosol	9.34	27.42
VIT_11s0118g00330.t01	Wine grape	nucleus	12.91	19.11
GSMUA_Achr5P27760_001	Banana	nucleus	32.97	19.05
VIT_18s0001g13060.t01	Wine grape	nucleus	21.15	17.38
VIT_03s0038g04400.t01	Wine grape	nucleus	20.88	16.7
VIT_04s0079g00560.t01	Wine grape	cytosol	4.4	10.32

Protein Annotations

EntrezGene:100247068	wikigene:100247068	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CBI29920	ProteinID:CBI29920.3
UniProt:D7TI44	EMBL:FN595991	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100247068	wikigene:LOC100247068
PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF9	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC60289
UniParc:UPI00015CA8C6	ArrayExpress:VIT_08s0007g07610	EnsemblPlantsGene:VIT_08s0007g07610	EnsemblPlants:VIT_08s0007g07610.t01	unigene:Vvi.10102	RefSeq:XP_002277026
RefSeq:XP_002277026.1	RefSeq:XP_019077259.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:21090236..21097333

Molecular Weight (calculated)

40541.6 Da

IEP (calculated)

8.926

GRAVY (calculated)

-0.720

Length

364 amino acids

Sequence
(BLAST)

001: MLKFNLGEFA TSSMGGSRSE AFWLPHSNER RYTARASATS HSFGSPSSLP ESCQWELSTK QSLSLPNRNS SGRRSFMSKP VYPLVFRNPV SDCEAFGDAE
101: RPSLGRLTPS DDRIPPSHWP DSNSSTEHKF HRSLTELQKL ETSPDPSASS RREGFRWSSA SSFDMGFDGE TFDMAEHMDV ESQRSPVCPV GDQRCGICGK
201: LLWQKSPWSS HRIMRGSDMP IAGILPCSHV FHAECLEQMT PKAQIHDPPC PMCLKTIGTL EESPAVSEPL QMALRTVRRS RGVVISGGQG NHRNDEASCN
301: DNDKESVRRK WLWTVPRPNG GSGSLLKNHL KKHFKFKGKM GQDFFNRKVF CRNGNGASSS TSVQ

Best Arabidopsis Sequence Match ( AT5G18260.1 )
(BLAST)

001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FK45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.