Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05863 | Soybean | nucleus | 69.75 | 71.2 |
| KRH15146 | Soybean | nucleus | 69.07 | 70.51 |
| KRH61121 | Soybean | plastid | 67.04 | 67.04 |
| KRH51797 | Soybean | nucleus | 65.24 | 66.9 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 58.01 | 56.48 |
| AT1G75400.1 | Thale cress | plastid | 52.14 | 50.77 |
| CDY47525 | Canola | nucleus, plastid | 53.05 | 50.76 |
| CDY69665 | Canola | nucleus, plastid | 52.6 | 50.22 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 13.77 | 49.19 |
| Bra015846.1-P | Field mustard | nucleus | 53.27 | 47.68 |
| Bra003754.1-P | Field mustard | nucleus, plastid | 20.99 | 44.93 |
| CDX68130 | Canola | nucleus, plastid | 20.99 | 44.93 |
| AT1G19680.1 | Thale cress | nucleus | 43.57 | 43.47 |
| Os01t0261100-01 | Rice | cytosol | 40.86 | 42.0 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 39.73 | 41.81 |
| EES00516 | Sorghum | cytosol | 40.63 | 41.47 |
| HORVU3Hr1G036310.2 | Barley | plastid | 39.73 | 41.03 |
| TraesCS3B01G208200.1 | Wheat | plastid | 39.5 | 40.79 |
| TraesCS3D01G183800.1 | Wheat | plastid | 39.28 | 40.65 |
| TraesCS3A01G176600.1 | Wheat | plastid | 39.05 | 40.33 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 38.83 | 40.19 |
| Zm00001d008306_P012 | Maize | cytosol | 40.18 | 40.18 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 38.6 | 40.14 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 38.83 | 40.09 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 38.15 | 39.49 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 37.92 | 39.34 |
| CDY39030 | Canola | nucleus, plastid | 18.06 | 37.38 |
| OQU86641 | Sorghum | nucleus | 36.12 | 37.38 |
| GSMUA_Achr10P... | Banana | nucleus | 35.21 | 33.91 |
| Zm00001d040317_P005 | Maize | cytosol | 34.76 | 33.62 |
| Bra008196.1-P | Field mustard | cytosol | 18.06 | 33.61 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 11.51 | 32.9 |
| VIT_11s0118g00330.t01 | Wine grape | nucleus | 12.19 | 21.95 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 17.38 | 21.15 |
Protein Annotations
| EntrezGene:100242078 | wikigene:100242078 | Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:CCB45978 | ProteinID:CCB45978.1 |
| UniProt:F6H1J7 | EMBL:FN595227 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100242078 | wikigene:LOC100242078 |
| PFscan:PS50089 | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF8 | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:TC58414 |
| UniParc:UPI0001985236 | ArrayExpress:VIT_18s0001g13060 | EnsemblPlantsGene:VIT_18s0001g13060 | EnsemblPlants:VIT_18s0001g13060.t01 | unigene:Vvi.3896 | RefSeq:XP_002281188 |
| RefSeq:XP_002281188.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr18:+:11153980..11161250
Molecular Weight (calculated)
48818.9 Da
IEP (calculated)
9.199
GRAVY (calculated)
-0.656
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVCCVPAK ERALPNRATG ESLHRNVIYS PSWSFHWDNR GRVAGEVDNT SYGAAHAVSR NVSLEMKGRL GHERGNFSDG GSLLDNFGTP TSQKSPVHEG
101: TVANLMTPSD LSMESNHYTE VKNLTESSEI ADLSAPKLSF SIPSTSSFST PTEDPLSSQT HPIPANSTPS RRARCSPGHQ LLRQVSDSRI LGLKSPNNNS
201: MSDRRPSFVL STCSNDLTNG SQGGSSDGWS MRTFSELVAS SQRERWSFDS EHFGSGRGKI SGSSSRFSCS PSIDLQNCGA CSKLLTERSS FSSQKIVPNN
301: ELSVVAVLVC GHVYHAECLE TMTLEADRFD PACPVCMVGE KQVSKMSRKA LRVEAELKAR NNKISRNRVV DSYLDGGFDV CDRRKHTEQE RKFPKMESSS
401: SVRSSFAKPF LRRHFSLGSK WSRSLSDSDS TRKKGFWARY RKD
101: TVANLMTPSD LSMESNHYTE VKNLTESSEI ADLSAPKLSF SIPSTSSFST PTEDPLSSQT HPIPANSTPS RRARCSPGHQ LLRQVSDSRI LGLKSPNNNS
201: MSDRRPSFVL STCSNDLTNG SQGGSSDGWS MRTFSELVAS SQRERWSFDS EHFGSGRGKI SGSSSRFSCS PSIDLQNCGA CSKLLTERSS FSSQKIVPNN
301: ELSVVAVLVC GHVYHAECLE TMTLEADRFD PACPVCMVGE KQVSKMSRKA LRVEAELKAR NNKISRNRVV DSYLDGGFDV CDRRKHTEQE RKFPKMESSS
401: SVRSSFAKPF LRRHFSLGSK WSRSLSDSDS TRKKGFWARY RKD
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.