CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95951
EES05647
EES07517
KXG37365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	EES05647	AT3G27960.1	21798944
AT1G75400.1	EER95951	AT3G22960.1	21798944
AT1G75400.1	KXG37365	AT3G22960.1	21798944
AT1G75400.1	EES07517	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G208100.1	Wheat	cytosol	65.65	65.65
TraesCS3D01G183700.1	Wheat	cytosol	65.42	65.57
TraesCS3A01G176900.1	Wheat	cytosol	64.72	64.72
HORVU3Hr1G036290.3	Barley	cytosol	64.25	64.1
EES00516	Sorghum	cytosol	64.02	63.13
GSMUA_Achr4P24550_001	Banana	nucleus	44.63	44.84
VIT_03s0038g04400.t01	Wine grape	nucleus	39.25	36.92
VIT_18s0001g13060.t01	Wine grape	nucleus	37.38	36.12
KRH05863	Soybean	nucleus	34.81	34.33
KRH15146	Soybean	nucleus	34.58	34.1
Solyc10g054030.1.1	Tomato	nucleus	32.71	33.65
PGSC0003DMT400066093	Potato	nucleus	32.71	33.57
KRH51493	Soybean	nucleus	34.11	33.56
Solyc01g109910.2.1	Tomato	nucleus	35.98	33.48
KRH20799	Soybean	nucleus	34.35	33.41
KRH60799	Soybean	nucleus, plastid	33.64	33.1
CDY39030	Canola	nucleus, plastid	16.36	32.71
PGSC0003DMT400089080	Potato	nucleus	33.88	32.44
KRH51797	Soybean	nucleus	32.71	32.41
KRH27444	Soybean	nucleus, plastid	32.71	32.41
KRH61121	Soybean	plastid	33.41	32.28
Bra003754.1-P	Field mustard	nucleus, plastid	15.19	31.4
CDX68130	Canola	nucleus, plastid	15.19	31.4
PGSC0003DMT400028504	Potato	cytosol, plastid	7.94	30.91
VIT_04s0079g00570.t01	Wine grape	cytosol	8.88	30.65
AT1G75400.1	Thale cress	plastid	32.01	30.11
Bra008196.1-P	Field mustard	cytosol	16.12	28.99
CDY13812	Canola	cytosol, nucleus, peroxisome	26.87	28.82
CDY47525	Canola	nucleus, plastid	31.07	28.73
CDY69665	Canola	nucleus, plastid	31.07	28.66
AT4G39140.3	Thale cress	nucleus	28.04	27.97
CDX82036	Canola	nucleus	26.4	27.97
Bra031193.1-P	Field mustard	nucleus	26.87	27.91
AT2G21500.2	Thale cress	nucleus	27.34	27.79
Bra015846.1-P	Field mustard	nucleus	31.31	27.07
AT1G19680.1	Thale cress	nucleus	27.8	26.8
CDY41965	Canola	nucleus	26.4	26.71
CDY42611	Canola	nucleus	26.17	26.67
Bra011873.1-P	Field mustard	nucleus	26.64	26.33
CDY12123	Canola	nucleus	25.7	26.07
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	24.07	25.75
Bra033599.1-P	Field mustard	nucleus	23.6	25.44
Bra010702.1-P	Field mustard	nucleus	23.83	24.7
CDX90314	Canola	nucleus	23.6	24.4
CDX72716	Canola	nucleus	21.96	24.1
VIT_04s0079g00560.t01	Wine grape	cytosol	8.41	23.23
KXG38574	Sorghum	plastid	15.42	15.49
EER92330	Sorghum	nucleus	15.89	14.72

Protein Annotations

EnsemblPlants:OQU86641	EnsemblPlantsGene:SORBI_3003G119600	EntrezGene:8085815	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFscan:PS50089	ProteinID:OQU86641
ProteinID:OQU86641.1	ProteinID:OQU86643.1	RefSeq:XP_002455395.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001A849E1	UniProt:A0A1W0VWZ0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:10833175..10838076

Molecular Weight (calculated)

47055.9 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.704

Length

428 amino acids

Sequence
(BLAST)

001: MGANCCIAAK ENSQPCMAPI EVSTYRVRHS PSWSFRWDNR THIEDIMENS TVFSNQSSGN IHLEVKNSFI APTEGHNSGD SRSDVLRRVK WQKSDKKMEA
101: SKLSKFDPPA HQSTAANPTL EAKSSKAPDI VTVASDTKTS ESLPSTLPLV PKADSEDPSS SRSHSICIDP NSTKEATQLP GHQLYRQSLD VNIPSLKLLI
201: GNSSAERPSS SKLSACSNDM FAGQLQGETS DGWSTRTPSD LVATTERDRW SVDNELLCSN ASKTSRSIGS HPSALSPGQE VCKLCSRLLK ERSSCNGHEL
301: AVVAVLFCGH AYHANCLDSI TAESEKYDPP CPVCTHGEAC TTKLFEKMEL KVKSKTSKNM ADTDLDGSFK HQKKVKREPR FGTSSSMKAT FSRPFLRRHF
401: STGSQPSTPV SGSEPTRKKG FWSRHWRE

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.