Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12123 | Canola | nucleus | 83.45 | 84.83 |
| CDY41965 | Canola | nucleus | 82.52 | 83.69 |
| CDY42611 | Canola | nucleus | 81.59 | 83.33 |
| Bra011873.1-P | Field mustard | nucleus | 82.28 | 81.52 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 72.73 | 78.0 |
| AT2G21500.2 | Thale cress | nucleus | 68.53 | 69.83 |
| CDX72716 | Canola | nucleus | 56.88 | 62.56 |
| CDX90314 | Canola | nucleus | 60.37 | 62.56 |
| Bra010702.1-P | Field mustard | nucleus | 59.91 | 62.23 |
| Bra033599.1-P | Field mustard | nucleus | 52.45 | 56.68 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 13.52 | 52.73 |
| KRH60799 | Soybean | nucleus, plastid | 47.55 | 46.9 |
| KRH51493 | Soybean | nucleus | 47.09 | 46.44 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 48.72 | 45.93 |
| KRH20799 | Soybean | nucleus | 45.45 | 44.32 |
| KRH27444 | Soybean | nucleus, plastid | 44.29 | 43.98 |
| Solyc01g109910.2.1 | Tomato | nucleus | 45.69 | 42.61 |
| PGSC0003DMT400066093 | Potato | nucleus | 41.26 | 42.45 |
| Solyc10g054030.1.1 | Tomato | nucleus | 41.03 | 42.31 |
| PGSC0003DMT400089080 | Potato | nucleus | 44.06 | 42.28 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 10.02 | 34.68 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 31.24 | 31.83 |
| AT1G75400.1 | Thale cress | plastid | 32.4 | 30.55 |
| Os01t0261100-01 | Rice | cytosol | 30.3 | 30.16 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 29.84 | 30.05 |
| HORVU3Hr1G036310.2 | Barley | plastid | 29.84 | 29.84 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 29.6 | 29.74 |
| EES00516 | Sorghum | cytosol | 30.07 | 29.72 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 10.72 | 29.68 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 29.6 | 29.67 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 29.6 | 29.67 |
| TraesCS3D01G183800.1 | Wheat | plastid | 29.37 | 29.44 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 29.14 | 29.14 |
| TraesCS3A01G176600.1 | Wheat | plastid | 29.14 | 29.14 |
| AT1G19680.1 | Thale cress | nucleus | 30.07 | 29.05 |
| TraesCS3B01G208200.1 | Wheat | plastid | 28.9 | 28.9 |
| Zm00001d008306_P012 | Maize | cytosol | 29.37 | 28.44 |
| OQU86641 | Sorghum | nucleus | 27.97 | 28.04 |
| Zm00001d040317_P005 | Maize | cytosol | 25.41 | 23.8 |
| GSMUA_Achr10P... | Banana | nucleus | 24.01 | 22.39 |
| AT1G14180.1 | Thale cress | nucleus | 17.02 | 20.98 |
| AT5G18260.1 | Thale cress | nucleus, plastid | 11.89 | 15.94 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:830069 | ProteinID:AEE87022.1 | ProteinID:AEE87023.1 | ProteinID:AEE87024.1 |
| ProteinID:AEE87025.1 | ProteinID:AEE87026.1 | ArrayExpress:AT4G39140 | EnsemblPlantsGene:AT4G39140 | RefSeq:AT4G39140 | TAIR:AT4G39140 |
| RefSeq:AT4G39140-TAIR-G | EnsemblPlants:AT4G39140.3 | TAIR:AT4G39140.3 | EMBL:AY062602 | EMBL:AY128790 | ProteinID:CAB43629.1 |
| ProteinID:CAB80577.1 | EMBL:DQ059127 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001078514.1 | RefSeq:NP_195625.1 |
| RefSeq:NP_849522.1 | RefSeq:NP_974711.1 | RefSeq:NP_974712.1 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 |
| PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | UniProt:Q9T023 | SUPFAM:SSF57850 | UniParc:UPI00000A95D6 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
Coordinates
chr4:-:18229094..18232202
Molecular Weight (calculated)
47550.3 Da
IEP (calculated)
9.084
GRAVY (calculated)
-0.727
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.