Factsheet for Bra010702.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90314	Canola	nucleus	97.09	96.86
AT4G39140.3	Thale cress	nucleus	62.23	59.91
Bra011873.1-P	Field mustard	nucleus	60.05	57.27
Bra033599.1-P	Field mustard	nucleus	52.06	54.16
Bra031193.1-P	Field mustard	nucleus	50.61	50.73
PGSC0003DMT400028504	Potato	cytosol, plastid	12.35	46.36
VIT_03s0038g04400.t01	Wine grape	nucleus	43.58	39.56
KRH60799	Soybean	nucleus, plastid	40.92	38.85
KRH51493	Soybean	nucleus	40.68	38.62
PGSC0003DMT400089080	Potato	nucleus	39.47	36.47
KRH20799	Soybean	nucleus	38.26	35.91
Solyc01g109910.2.1	Tomato	nucleus	39.71	35.65
Solyc10g054030.1.1	Tomato	nucleus	35.84	35.58
KRH27444	Soybean	nucleus, plastid	37.05	35.42
PGSC0003DMT400066093	Potato	nucleus	35.35	35.01
VIT_04s0079g00570.t01	Wine grape	cytosol	10.17	33.87
Bra003754.1-P	Field mustard	nucleus, plastid	15.98	31.88
Bra008196.1-P	Field mustard	cytosol	17.92	31.09
VIT_04s0079g00560.t01	Wine grape	cytosol	10.65	28.39
Bra015846.1-P	Field mustard	nucleus	33.9	28.28
GSMUA_Achr6P08950_001	Banana	nucleus	28.81	28.27
EES00516	Sorghum	cytosol	28.33	26.96
Os01t0261100-01	Rice	cytosol	28.09	26.91
TraesCS3D01G183800.1	Wheat	plastid	27.84	26.87
HORVU3Hr1G036310.2	Barley	plastid	27.84	26.81
GSMUA_Achr4P24550_001	Banana	nucleus	27.6	26.76
TraesCS3B01G208200.1	Wheat	plastid	27.6	26.57
TraesCS3A01G176600.1	Wheat	plastid	27.36	26.34
TraesCS3D01G183700.1	Wheat	cytosol	26.88	26.0
TraesCS3A01G176900.1	Wheat	cytosol	26.88	25.93
TraesCS3B01G208100.1	Wheat	cytosol	26.88	25.93
Zm00001d008306_P012	Maize	cytosol	27.6	25.73
HORVU3Hr1G036290.3	Barley	cytosol	26.39	25.41
OQU86641	Sorghum	nucleus	24.7	23.83
Zm00001d040317_P005	Maize	cytosol	24.46	22.05
GSMUA_Achr10P...	Banana	nucleus	23.73	21.3
Bra026851.1-P	Field mustard	nucleus, plastid	14.77	19.37
Bra019673.1-P	Field mustard	nucleus, plastid	15.5	18.88
Bra002147.1-P	Field mustard	nucleus	16.22	17.45

Protein Annotations

EnsemblPlants:Bra010702.1	EnsemblPlants:Bra010702.1-P	EnsemblPlantsGene:Bra010702	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFscan:PS50089	SEG:seg
SUPFAM:SSF57850	UniParc:UPI000254696B	UniProt:M4D2K2	MapMan:35.2	:	:

Description

AT4G39140 (E=4e-160) | protein binding / zinc ion binding

Coordinates

chrA08:+:16051816..16053351

Molecular Weight (calculated)

45680.2 Da

IEP (calculated)

8.356

GRAVY (calculated)

-0.701

Length

413 amino acids

Sequence
(BLAST)

001: MGNACCVAPR DKMVLLPNSS SATAERRHSP TWSFRWDNNH NRGRVAGEEA SLSWLSDGIS RNDVLSDFKS DFLSSQGSPL HSFRTLQKSP ASDLSFPRDS
101: SMDTVFEQKE KDSIESAEPS YPSPAQLSLS LASQPSSFPT SPLPSQIYYH PASSSTLNPT QQVSDGKICG MNSLSRSSIT ERQGTPLRCD SSESGPSEAW
201: SLQAFSEMMS SSRSTEPMSY DNDRFGLERD KTGHHGNRKS NHQQQSCGAC SRPLSEKSLW SSQKMFMTNE LSVSAILACG HVYHGECLEK MTPEIDKFDP
301: SCPICTLGEK KTAKLSEKAL RVEMDLKARH NKRLRNRVLD SGFDCDDFVM FDDSHRVEAA AGKSPKLVSS SSAKSYSAKP FLARHFSFGS TKSTKENLPV
401: KKKGFFWTNS SKI

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.