CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60799	Soybean	nucleus, plastid	93.1	93.1
KRH20799	Soybean	nucleus	72.87	72.05
KRH27444	Soybean	nucleus, plastid	70.34	70.83
VIT_03s0038g04400.t01	Wine grape	nucleus	64.14	61.32
PGSC0003DMT400066093	Potato	nucleus	51.72	53.96
Solyc10g054030.1.1	Tomato	nucleus	51.26	53.61
PGSC0003DMT400089080	Potato	nucleus	54.02	52.57
Solyc01g109910.2.1	Tomato	nucleus	54.48	51.52
CDY13812	Canola	cytosol, nucleus, peroxisome	46.9	51.13
VIT_04s0079g00570.t01	Wine grape	cytosol	14.48	50.81
AT2G21500.2	Thale cress	nucleus	48.51	50.12
PGSC0003DMT400028504	Potato	cytosol, plastid	12.64	50.0
Bra031193.1-P	Field mustard	nucleus	47.13	49.76
KRH15146	Soybean	nucleus	47.59	47.7
KRH05863	Soybean	nucleus	47.13	47.23
AT4G39140.3	Thale cress	nucleus	46.44	47.09
CDY41965	Canola	nucleus	45.75	47.04
KRH51797	Soybean	nucleus	45.98	46.3
KRH61121	Soybean	plastid	47.13	46.28
Bra011873.1-P	Field mustard	nucleus	45.75	45.96
CDY12123	Canola	nucleus	44.37	45.73
CDY42611	Canola	nucleus	43.91	45.48
CDX82036	Canola	nucleus	41.61	44.8
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	38.85	42.25
Bra010702.1-P	Field mustard	nucleus	38.62	40.68
CDX90314	Canola	nucleus	38.16	40.1
CDX72716	Canola	nucleus	35.17	39.23
TraesCS3A01G176900.1	Wheat	cytosol	37.93	38.55
TraesCS3D01G183700.1	Wheat	cytosol	37.47	38.17
TraesCS3B01G208100.1	Wheat	cytosol	37.47	38.08
GSMUA_Achr6P08950_001	Banana	nucleus	36.78	38.0
HORVU3Hr1G036290.3	Barley	cytosol	37.47	38.0
GSMUA_Achr4P24550_001	Banana	nucleus	36.55	37.32
Bra033599.1-P	Field mustard	nucleus	33.1	36.27
EES00516	Sorghum	cytosol	36.09	36.18
VIT_04s0079g00560.t01	Wine grape	cytosol	12.87	36.13
Os01t0261100-01	Rice	cytosol	35.4	35.73
TraesCS3B01G208200.1	Wheat	plastid	34.71	35.2
HORVU3Hr1G036310.2	Barley	plastid	34.71	35.2
Zm00001d008306_P012	Maize	cytosol	35.63	34.99
TraesCS3A01G176600.1	Wheat	plastid	34.48	34.97
TraesCS3D01G183800.1	Wheat	plastid	34.25	34.81
OQU86641	Sorghum	nucleus	33.56	34.11
Zm00001d040317_P005	Maize	cytosol	31.26	29.69
GSMUA_Achr10P...	Banana	nucleus	29.66	28.04
KRH20198	Soybean	nucleus	9.43	27.33
KRH03610	Soybean	plastid	7.13	25.41
KRH74897	Soybean	nucleus	17.47	20.49
KRH70752	Soybean	nucleus	19.08	20.05

Protein Annotations

EMBL:ACUP02003377	EMBL:ACUP02003378	EnsemblPlants:KRH51493	EnsemblPlantsGene:GLYMA_06G009900	EntrezGene:100795372	Gene3D:3.30.40.10
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2
PFscan:PS50089	ProteinID:KRH51493	ProteinID:KRH51493.1	ProteinID:KRH51494.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00023398D2	UniProt:I1K745	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr6:-:770496..775268

Molecular Weight (calculated)

47903.6 Da

IEP (calculated)

9.101

GRAVY (calculated)

-0.691

Length

435 amino acids

Sequence
(BLAST)

001: MGAACCVAAR DKTIQSGSTS DNLHRNVRCS PTWSFRWDHR GRVAGEDTSI NWFSDGISRN DGSENKNEST YMSEDGSPLQ NDQRKRCQKP SISQVTAAHR
101: RNSTSDQSFS RTVSTDVSVE QVNRLAESSI VSCPSPTKPS LPSTSLSASP LSSPCHIPPS SSAPLRWPCH SPGHHLSRQA SDSRIPAVKS PSSFSLSEER
201: AVFSSWSNEV GMHSHGGSSD GWSIPGFSEL MGTPHRERWS FDSESFGFNR ERLARPSSWF SASPVDLQSC GICSKLLAEK SSWSTQKIIA SNDLSVVAVL
301: ICGHVYHAEC LEIMTPDINK YDPACPVCTF GEKQTMKLSE KALKAEMDLK ARTNKSKNRV VDSDIDDDSV VFHHFKGRGL KGKSPRIDSS SNGRSSYGKP
401: FLRRHFSFGS KGSRSTLDNH PTRKKGFFWA KSSKE

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.