Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3A01G176900.1 | Wheat | cytosol | 97.66 | 97.43 |
TraesCS3B01G208100.1 | Wheat | cytosol | 97.42 | 97.2 |
HORVU3Hr1G036290.3 | Barley | cytosol | 95.32 | 94.87 |
TraesCS3D01G183800.1 | Wheat | plastid | 70.26 | 70.09 |
OQU86641 | Sorghum | nucleus | 65.57 | 65.42 |
GSMUA_Achr4P24550_001 | Banana | nucleus | 46.37 | 46.48 |
VIT_03s0038g04400.t01 | Wine grape | nucleus | 40.75 | 38.24 |
VIT_18s0001g13060.t01 | Wine grape | nucleus | 39.34 | 37.92 |
KRH60799 | Soybean | nucleus, plastid | 38.17 | 37.47 |
KRH51493 | Soybean | nucleus | 38.17 | 37.47 |
KRH05863 | Soybean | nucleus | 37.94 | 37.33 |
KRH15146 | Soybean | nucleus | 37.7 | 37.1 |
KRH51797 | Soybean | nucleus | 36.53 | 36.11 |
Solyc10g054030.1.1 | Tomato | nucleus | 35.13 | 36.06 |
KRH20799 | Soybean | nucleus | 37.0 | 35.91 |
PGSC0003DMT400066093 | Potato | nucleus | 34.89 | 35.73 |
VIT_04s0079g00570.t01 | Wine grape | cytosol | 10.3 | 35.48 |
KRH61121 | Soybean | plastid | 36.77 | 35.44 |
Solyc01g109910.2.1 | Tomato | nucleus | 38.17 | 35.43 |
KRH27444 | Soybean | nucleus, plastid | 35.6 | 35.19 |
PGSC0003DMT400089080 | Potato | nucleus | 36.07 | 34.45 |
AT1G75400.1 | Thale cress | plastid | 34.19 | 32.09 |
PGSC0003DMT400028504 | Potato | cytosol, plastid | 8.2 | 31.82 |
CDY39030 | Canola | nucleus, plastid | 15.93 | 31.78 |
CDY47525 | Canola | nucleus, plastid | 34.43 | 31.75 |
Bra003754.1-P | Field mustard | nucleus, plastid | 15.22 | 31.4 |
CDX68130 | Canola | nucleus, plastid | 15.22 | 31.4 |
CDY69665 | Canola | nucleus, plastid | 33.72 | 31.03 |
AT2G21500.2 | Thale cress | nucleus | 29.51 | 29.93 |
AT4G39140.3 | Thale cress | nucleus | 29.74 | 29.6 |
CDY13812 | Canola | cytosol, nucleus, peroxisome | 27.63 | 29.57 |
Bra015846.1-P | Field mustard | nucleus | 34.19 | 29.49 |
Bra031193.1-P | Field mustard | nucleus | 27.63 | 28.64 |
AT1G19680.1 | Thale cress | nucleus | 29.74 | 28.6 |
CDX82036 | Canola | nucleus | 26.7 | 28.22 |
CDY12123 | Canola | nucleus | 27.63 | 27.96 |
Bra008196.1-P | Field mustard | cytosol | 15.46 | 27.73 |
CDY41965 | Canola | nucleus | 27.4 | 27.66 |
CDY42611 | Canola | nucleus | 27.17 | 27.62 |
Bra011873.1-P | Field mustard | nucleus | 27.4 | 27.02 |
CDX72716 | Canola | nucleus | 24.59 | 26.92 |
Bra010702.1-P | Field mustard | nucleus | 26.0 | 26.88 |
CDX90314 | Canola | nucleus | 26.0 | 26.81 |
CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 25.06 | 26.75 |
Bra033599.1-P | Field mustard | nucleus | 24.82 | 26.7 |
VIT_04s0079g00560.t01 | Wine grape | cytosol | 8.2 | 22.58 |
TraesCS6D01G284300.1 | Wheat | nucleus | 16.86 | 15.62 |
Protein Annotations
EnsemblPlants:TraesCS3D01G183700.1 | EnsemblPlantsGene:TraesCS3D01G183700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF18 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
SUPFAM:SSF57850 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:168850712..168855090
Molecular Weight (calculated)
46744.7 Da
IEP (calculated)
10.046
GRAVY (calculated)
-0.761
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MGANCCIAAK QRPEPSVASV EVSAYRTRHS PSWSFRWDNR THIEDIMENA ALFSNHSSGN IRPELKSGSI APTEGHPNED NLSDVFRGVK CQKPDKKMEA
101: SKRSKAGPQA VQSTASNSPP EAKSCKSSDM VNVASDIKTS KSLPSTPPLV SRTDPSSSRC HSLHVDSFSM RKARRSPGHQ LCRQISDGKI PSLKSFSESS
201: YAGGRPSSSM LSTYSNDPFG GGSQHGGSSD GWSTRTFSDL VASSQRERWS VDSELFGSIS SKIARSNDSH ATALSPDEGI CKLCSKLLKE RSTWSAHDLG
301: VVAVLFCGHA YHANCLDSTT CESEKYDPPC PVCTHGEKGA AKLFGKLDSK IKSRKSKNVM SDTDIDRISK HKRSMREPRL GTSSSMKDSF RRPFLKRHFS
401: IGSRPPRSVL GSEPTGKKGF WARHWRE
101: SKRSKAGPQA VQSTASNSPP EAKSCKSSDM VNVASDIKTS KSLPSTPPLV SRTDPSSSRC HSLHVDSFSM RKARRSPGHQ LCRQISDGKI PSLKSFSESS
201: YAGGRPSSSM LSTYSNDPFG GGSQHGGSSD GWSTRTFSDL VASSQRERWS VDSELFGSIS SKIARSNDSH ATALSPDEGI CKLCSKLLKE RSTWSAHDLG
301: VVAVLFCGHA YHANCLDSTT CESEKYDPPC PVCTHGEKGA AKLFGKLDSK IKSRKSKNVM SDTDIDRISK HKRSMREPRL GTSSSMKDSF RRPFLKRHFS
401: IGSRPPRSVL GSEPTGKKGF WARHWRE
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.