CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010702.1-P	Field mustard	nucleus	96.86	97.09
CDY12123	Canola	nucleus	66.91	65.64
CDX72716	Canola	nucleus	57.0	60.51
AT4G39140.3	Thale cress	nucleus	62.56	60.37
CDY42611	Canola	nucleus	61.11	60.24
CDY41965	Canola	nucleus	60.39	59.1
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	54.35	56.25
CDX82036	Canola	nucleus	50.48	51.73
CDY13812	Canola	cytosol, nucleus, peroxisome	49.28	51.13
PGSC0003DMT400028504	Potato	cytosol, plastid	12.56	47.27
VIT_03s0038g04400.t01	Wine grape	nucleus	43.24	39.34
KRH60799	Soybean	nucleus, plastid	40.34	38.39
KRH51493	Soybean	nucleus	40.1	38.16
PGSC0003DMT400089080	Potato	nucleus	39.37	36.47
KRH20799	Soybean	nucleus	37.92	35.68
Solyc01g109910.2.1	Tomato	nucleus	39.61	35.65
Solyc10g054030.1.1	Tomato	nucleus	35.75	35.58
KRH27444	Soybean	nucleus, plastid	36.72	35.19
PGSC0003DMT400066093	Potato	nucleus	35.27	35.01
VIT_04s0079g00570.t01	Wine grape	cytosol	10.14	33.87
CDY39030	Canola	nucleus, plastid	17.15	33.18
CDX68130	Canola	nucleus, plastid	15.94	31.88
CDY47525	Canola	nucleus, plastid	34.54	30.89
CDY69665	Canola	nucleus, plastid	34.3	30.6
VIT_04s0079g00560.t01	Wine grape	cytosol	10.63	28.39
GSMUA_Achr6P08950_001	Banana	nucleus	28.74	28.27
Os01t0261100-01	Rice	cytosol	28.26	27.15
HORVU3Hr1G036310.2	Barley	plastid	28.02	27.04
GSMUA_Achr4P24550_001	Banana	nucleus	27.78	27.0
EES00516	Sorghum	cytosol	28.26	26.96
TraesCS3D01G183800.1	Wheat	plastid	27.78	26.87
TraesCS3B01G208200.1	Wheat	plastid	27.54	26.57
TraesCS3A01G176600.1	Wheat	plastid	27.29	26.34
TraesCS3D01G183700.1	Wheat	cytosol	26.81	26.0
TraesCS3B01G208100.1	Wheat	cytosol	26.81	25.93
TraesCS3A01G176900.1	Wheat	cytosol	26.81	25.93
Zm00001d008306_P012	Maize	cytosol	27.54	25.73
HORVU3Hr1G036290.3	Barley	cytosol	26.33	25.41
OQU86641	Sorghum	nucleus	24.4	23.6
Zm00001d040317_P005	Maize	cytosol	24.15	21.83
GSMUA_Achr10P...	Banana	nucleus	23.67	21.3
CDY33767	Canola	nucleus, plastid	14.73	19.37
CDY49106	Canola	plastid	15.46	18.88
CDX81616	Canola	nucleus, plastid	14.25	17.56
CDY54050	Canola	plastid	15.94	16.97
CDY54049	Canola	plastid	15.7	16.67
CDY38501	Canola	nucleus	14.25	15.53

Protein Annotations

EnsemblPlants:CDX90314	EnsemblPlantsGene:GSBRNA2T00150897001	Gene3D:3.30.40.10	GO:A0A078DP81	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFscan:PS50089	ProteinID:CDX90314
ProteinID:CDX90314.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EE435F	MapMan:35.2	:

Description

BnaA08g16700D

Coordinates

chrLK031862:-:1197925..1200025

Molecular Weight (calculated)

45737.4 Da

IEP (calculated)

8.217

GRAVY (calculated)

-0.642

Length

414 amino acids

Sequence
(BLAST)

001: MGNACCVAPR DKMVLLPNSS SAAAERRHSP TWSFRWDNNH NRGRVAGEEA SLSWLSDGIS RNDVLSDFKS EFLSSQGSPL DSFRTLQKSP ASDLSFPRDS
101: SMDTVFEQKE KDLIESAAPS YPSPAQLSLS LASQPSSFPT SPLPSQIYYH PASSSTLNPT QQVSDGKICG MNSLSRSSIT EERQGTPLRC DSSVSGPSEA
201: WSLQAFSEMM SSSRSNEPLS YDNDRFGLER DKMGHHGNRM SNHQQQSCGA CSRPLSEKSL WSSQKMFMTN ELSVSAILAC GHVYHGECLE KMTPEIDKFD
301: PSCPICTLGE KKTAKLSEKA LRVEMDLKAR HNKRLRNRVL DSGFDCEDFV MFDDSHRVEA AAGKSPKLVS SSSAKSYSAK PFLARHFSFG SSKSTKENLP
401: VKKKGFFWTN SSKI

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.