CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51493	Soybean	nucleus	93.1	93.1
KRH20799	Soybean	nucleus	73.56	72.73
KRH27444	Soybean	nucleus, plastid	70.8	71.3
VIT_03s0038g04400.t01	Wine grape	nucleus	63.68	60.88
PGSC0003DMT400066093	Potato	nucleus	52.41	54.68
Solyc10g054030.1.1	Tomato	nucleus	51.95	54.33
PGSC0003DMT400089080	Potato	nucleus	53.79	52.35
CDY13812	Canola	cytosol, nucleus, peroxisome	47.36	51.63
Solyc01g109910.2.1	Tomato	nucleus	54.25	51.3
PGSC0003DMT400028504	Potato	cytosol, plastid	12.87	50.91
AT2G21500.2	Thale cress	nucleus	48.97	50.59
Bra031193.1-P	Field mustard	nucleus	47.82	50.49
VIT_04s0079g00570.t01	Wine grape	cytosol	13.79	48.39
AT4G39140.3	Thale cress	nucleus	46.9	47.55
CDY41965	Canola	nucleus	46.21	47.52
KRH15146	Soybean	nucleus	47.36	47.47
KRH61121	Soybean	plastid	48.28	47.4
KRH51797	Soybean	nucleus	46.9	47.22
KRH05863	Soybean	nucleus	46.9	47.0
Bra011873.1-P	Field mustard	nucleus	46.21	46.42
CDY12123	Canola	nucleus	44.6	45.97
CDY42611	Canola	nucleus	44.37	45.95
CDX82036	Canola	nucleus	42.53	45.79
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	38.16	41.5
Bra010702.1-P	Field mustard	nucleus	38.85	40.92
CDX90314	Canola	nucleus	38.39	40.34
CDX72716	Canola	nucleus	34.71	38.72
TraesCS3A01G176900.1	Wheat	cytosol	37.93	38.55
TraesCS3D01G183700.1	Wheat	cytosol	37.47	38.17
TraesCS3B01G208100.1	Wheat	cytosol	37.47	38.08
GSMUA_Achr6P08950_001	Banana	nucleus	36.55	37.77
HORVU3Hr1G036290.3	Barley	cytosol	37.24	37.76
GSMUA_Achr4P24550_001	Banana	nucleus	36.78	37.56
Bra033599.1-P	Field mustard	nucleus	33.1	36.27
EES00516	Sorghum	cytosol	36.09	36.18
Os01t0261100-01	Rice	cytosol	35.17	35.5
TraesCS3B01G208200.1	Wheat	plastid	34.71	35.2
HORVU3Hr1G036310.2	Barley	plastid	34.71	35.2
TraesCS3D01G183800.1	Wheat	plastid	34.48	35.05
Zm00001d008306_P012	Maize	cytosol	35.63	34.99
TraesCS3A01G176600.1	Wheat	plastid	34.48	34.97
VIT_04s0079g00560.t01	Wine grape	cytosol	12.41	34.84
OQU86641	Sorghum	nucleus	33.1	33.64
Zm00001d040317_P005	Maize	cytosol	30.57	29.04
GSMUA_Achr10P...	Banana	nucleus	29.66	28.04
KRH20198	Soybean	nucleus	9.66	28.0
KRH03610	Soybean	plastid	6.9	24.59
KRH74897	Soybean	nucleus	17.7	20.75
KRH70752	Soybean	nucleus	19.31	20.29

Protein Annotations

EMBL:ACUP02002140	EnsemblPlants:KRH60799	EnsemblPlantsGene:GLYMA_04G010000	EntrezGene:100778123	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFscan:PS50089
ProteinID:KRH60799	ProteinID:KRH60799.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002339DAC
UniProt:I1JSL5	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:780013..784669

Molecular Weight (calculated)

47790.4 Da

IEP (calculated)

8.545

GRAVY (calculated)

-0.668

Length

435 amino acids

Sequence
(BLAST)

001: MGAACCVAAR DKTIQSGSTS DNLHRNARCS PTWSFRWDHR GRVAGEDTSI NWFSDGISRN DGSENKNESA YVSEDGSPLQ NYQQKRCQKP PISEVTAAHR
101: RNSTSDQSFS RTVSTDVNIE QVNGLAESSI VSCPSPTKPS LPSTSLSASP LSSQCHIPPS SSTPLRWPCH SPGHQLSQQA YDSRIPAVKS PSSFSLSDER
201: PVFSSWSNEV GMHSHGGSSD GWSIPGFSEL MGTPQRERWS FDSESYGFNR ERLARPSSWF SASQVDLQSC GICSKLLAEK SSWSMQKIIA SNDLSVVAVL
301: VCGHVCHAEC LEIMTPDINK YDPACPVCTF GEKQTIKLSE KALKAEMDLK ARNNKSKNRV VDSDIDDDSV VFDHFKGRGL KGKGPRIDSS SSGRSSFGKP
401: FLRRHFSFGS KGSRSVLDNH PTRKKGFFWA KSSKE

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.