Factsheet for TraesCS3A01G176600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G240200.1
TraesCS2B01G257800.1
TraesCS2D01G237900.1
TraesCS6A01G251400.1
TraesCS6A01G274500.1
TraesCS6B01G273900.1
TraesCS6B01G302000.1
TraesCS6D01G233200.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G19680.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G19680.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G75400.1	TraesCS2A01G240200.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS2B01G257800.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS2D01G237900.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G75400.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G75400.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G036310.2	Barley	plastid	97.9	97.9
TraesCS3D01G183800.1	Wheat	plastid	97.67	97.9
TraesCS3B01G208200.1	Wheat	plastid	97.67	97.67
Os01t0261100-01	Rice	cytosol	84.15	83.76
EES00516	Sorghum	cytosol	82.28	81.34
Zm00001d008306_P012	Maize	cytosol	78.09	75.62
TraesCS3A01G176900.1	Wheat	cytosol	70.86	71.03
Zm00001d040317_P005	Maize	cytosol	73.89	69.21
GSMUA_Achr4P24550_001	Banana	nucleus	49.42	49.77
VIT_03s0038g04400.t01	Wine grape	nucleus	43.12	40.66
VIT_18s0001g13060.t01	Wine grape	nucleus	40.33	39.05
KRH05863	Soybean	nucleus	38.23	37.79
KRH51797	Soybean	nucleus	37.76	37.5
KRH15146	Soybean	nucleus	37.53	37.1
KRH61121	Soybean	plastid	38.0	36.79
PGSC0003DMT400066093	Potato	nucleus	35.66	36.69
Solyc10g054030.1.1	Tomato	nucleus	35.2	36.3
KRH20799	Soybean	nucleus	36.83	35.91
VIT_04s0079g00570.t01	Wine grape	cytosol	10.26	35.48
KRH27444	Soybean	nucleus, plastid	35.2	34.95
KRH51493	Soybean	nucleus	34.97	34.48
KRH60799	Soybean	nucleus, plastid	34.97	34.48
Solyc01g109910.2.1	Tomato	nucleus	36.83	34.35
AT1G75400.1	Thale cress	plastid	35.43	33.41
PGSC0003DMT400089080	Potato	nucleus	34.5	33.11
PGSC0003DMT400028504	Potato	cytosol, plastid	8.39	32.73
CDY39030	Canola	nucleus, plastid	16.32	32.71
CDY13812	Canola	cytosol, nucleus, peroxisome	29.84	32.08
Bra003754.1-P	Field mustard	nucleus, plastid	15.15	31.4
CDX68130	Canola	nucleus, plastid	15.15	31.4
CDY47525	Canola	nucleus, plastid	33.8	31.32
Bra031193.1-P	Field mustard	nucleus	30.07	31.31
AT2G21500.2	Thale cress	nucleus	30.54	31.12
CDY69665	Canola	nucleus, plastid	33.57	31.03
CDX82036	Canola	nucleus	28.67	30.45
Bra015846.1-P	Field mustard	nucleus	34.03	29.49
Bra008196.1-P	Field mustard	cytosol	16.32	29.41
AT1G19680.1	Thale cress	nucleus	30.3	29.28
AT4G39140.3	Thale cress	nucleus	29.14	29.14
CDY41965	Canola	nucleus	27.97	28.37
CDY42611	Canola	nucleus	27.51	28.1
Bra011873.1-P	Field mustard	nucleus	27.74	27.48
Bra010702.1-P	Field mustard	nucleus	26.34	27.36
CDX90314	Canola	nucleus	26.34	27.29
CDY12123	Canola	nucleus	26.81	27.25
VIT_04s0079g00560.t01	Wine grape	cytosol	9.56	26.45
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	24.48	26.25
CDX72716	Canola	nucleus	23.78	26.15
Bra033599.1-P	Field mustard	nucleus	24.01	25.94
TraesCS6A01G305100.2	Wheat	nucleus	18.88	17.53

Protein Annotations

EnsemblPlants:TraesCS3A01G176600.1	EnsemblPlantsGene:TraesCS3A01G176600	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150
PANTHER:PTHR31150:SF18	PFAM:PF00097	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:197858853..197865277

Molecular Weight (calculated)

47349.8 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.679

Length

429 amino acids

Sequence
(BLAST)

001: MGANCCIAAK QRPQPCIIPV EVSAYRNVRH SPSWSFRWDN RTHIEDIMEI PTFLSNHSSG SIRPETKSGS IAPTEGFSNG GSPSELFHKV KWQKTEKKME
101: TSKVAQSDPR ADRPTASNSS PEAKLCRKSL DMVSVASDTK ASTSVPSTPP VVSRADPSSS RGHSLGMDTD SMRKARRSPG YQLYRQVSDS KIPSLRSLNE
201: SNSPEGRPSS SMLSVCSNDL SVAGSHGESS DGWSMRTFSE MVASSQRERW SIDSELLGSV SSKMTRSNAS NHTTVSPDQE VCKLCLKLLK ERPAWNAQDL
301: GVVAVLLCGH VYHADCLDSL TAEAEKYDPP CPVCTHGEQC TVKLFGKLES KIKNKMPTNV ILDGDLDGSS KHQKKSKRVP RLGTSISMKD SFSRPFLRRH
401: FSIGSRSPRL VSESESTRKK GFWARHWRE

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.