CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY41709
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	CDX86457	AT3G27960.1	21798944
AT1G19680.1	CDY58518	AT3G27960.1	21798944
AT1G19680.1	CDY41709	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008196.1-P	Field mustard	cytosol	79.91	71.85
CDX68130	Canola	nucleus, plastid	33.64	34.78
CDY47525	Canola	nucleus, plastid	49.53	22.89
CDY69665	Canola	nucleus, plastid	49.53	22.84
AT1G19680.1	Thale cress	nucleus	43.93	21.17
CDX72716	Canola	nucleus	34.11	18.72
KRH15146	Soybean	nucleus	37.38	18.43
KRH05863	Soybean	nucleus	37.38	18.43
VIT_18s0001g13060.t01	Wine grape	nucleus	37.38	18.06
KRH51797	Soybean	nucleus	36.45	18.06
KRH61121	Soybean	plastid	36.92	17.83
CDX90314	Canola	nucleus	33.18	17.15
CDY13812	Canola	cytosol, nucleus, peroxisome	31.31	16.79
Os01t0261100-01	Rice	cytosol	33.64	16.71
EES00516	Sorghum	cytosol	33.64	16.59
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	30.84	16.5
OQU86641	Sorghum	nucleus	32.71	16.36
CDY12123	Canola	nucleus	32.24	16.35
TraesCS3B01G208200.1	Wheat	plastid	32.71	16.32
TraesCS3A01G176600.1	Wheat	plastid	32.71	16.32
TraesCS3D01G183800.1	Wheat	plastid	32.24	16.12
CDX82036	Canola	nucleus	30.37	16.09
HORVU3Hr1G036290.3	Barley	cytosol	32.24	16.08
HORVU3Hr1G036310.2	Barley	plastid	32.24	16.08
TraesCS3D01G183700.1	Wheat	cytosol	31.78	15.93
TraesCS3B01G208100.1	Wheat	cytosol	31.78	15.89
TraesCS3A01G176900.1	Wheat	cytosol	31.78	15.89
Zm00001d008306_P012	Maize	cytosol	32.71	15.8
CDY42611	Canola	nucleus	30.84	15.71
GSMUA_Achr6P08950_001	Banana	nucleus	30.37	15.44
CDY41965	Canola	nucleus	30.37	15.37
GSMUA_Achr4P24550_001	Banana	nucleus	28.97	14.55
CDY33767	Canola	nucleus, plastid	19.63	13.33
GSMUA_Achr10P...	Banana	nucleus	28.5	13.26
CDY49106	Canola	plastid	20.56	12.98
Zm00001d040317_P005	Maize	cytosol	27.1	12.66
CDX81616	Canola	nucleus, plastid	19.16	12.2
CDY54049	Canola	plastid	16.82	9.23
CDY54050	Canola	plastid	16.36	9.0
CDY38501	Canola	nucleus	14.95	8.42

Protein Annotations

EnsemblPlants:CDY39030	EnsemblPlantsGene:GSBRNA2T00067164001	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR31150	PANTHER:PTHR31150:SF8	ProteinID:CDY39030	ProteinID:CDY39030.1	SEG:seg	SUPFAM:SSF57850
UniParc:UPI0004EDFFFA	UniProt:A0A078HKQ1	MapMan:35.2	:	:	:

Description

BnaA02g17190DBnaA02g17190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKQ1]

Coordinates

chrLK032439:+:20327..21787

Molecular Weight (calculated)

23799.2 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.557

Length

214 amino acids

Sequence
(BLAST)

001: MGSVCCVAVK DRKLPPPYSS LASHDPIESI VPAAPPKPSE GRWSSTSSND LASSEGDWSV NTFSELGGVF SKGQMMSSVA AVLACGHVYH AECLETVTTE
101: IEKYDPACRI CTIGEKLTRK ALNAEAEAKA KQFKRCKNRL MDTTECDEFT FQKTGKALKM EPPSRSSKST SMSFLKWHSK WSKPSSKDSV LKKWFWSRHL
201: YNRSSSSIEF HSTR

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.