CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026851.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDX81616	Canola	nucleus, plastid	93.65	87.8
AT1G14180.1	Thale cress	nucleus	68.89	62.36
CDY49106	Canola	plastid	60.32	56.05
Solyc05g007820.2.1	Tomato	nucleus	27.3	33.86
KRH74897	Soybean	nucleus	38.41	32.61
KRH70752	Soybean	nucleus	40.95	31.16
PGSC0003DMT400047431	Potato	nucleus, plastid	38.41	29.88
Os10t0406200-01	Rice	nucleus	30.48	22.17
KXG38574	Sorghum	plastid	29.84	22.07
GSMUA_Achr3P01890_001	Banana	nucleus	35.56	21.5
CDY39030	Canola	nucleus, plastid	13.33	19.63
CDX82036	Canola	nucleus	22.54	17.57
CDY13812	Canola	cytosol, nucleus, peroxisome	22.22	17.54
CDX68130	Canola	nucleus, plastid	11.43	17.39
CDY42611	Canola	nucleus	21.9	16.43
CDY41965	Canola	nucleus	21.59	16.08
CDY38501	Canola	nucleus	19.37	16.05
CDX72716	Canola	nucleus	19.05	15.38
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	19.37	15.25
CDY54049	Canola	plastid	18.73	15.13
CDY54050	Canola	plastid	18.41	14.91
CDX90314	Canola	nucleus	19.37	14.73
Zm00001d014199_P003	Maize	plastid	30.16	14.5
CDY12123	Canola	nucleus	19.05	14.22
CDY47525	Canola	nucleus, plastid	19.37	13.17
CDY69665	Canola	nucleus, plastid	19.37	13.15

Protein Annotations

EnsemblPlants:CDY33767	EnsemblPlantsGene:GSBRNA2T00055183001	Gene3D:3.30.40.10	GO:A0A078H8C0	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	PFAM:PF00097	PFscan:PS50089	ProteinID:CDY33767	ProteinID:CDY33767.1
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002542E11	UniProt:A0A078H8C0	MapMan:35.2	:

Description

BnaA09g45730DBnaA09g45730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8C0]

Coordinates

chrLK032321:-:253587..255300

Molecular Weight (calculated)

34739.5 Da

IEP (calculated)

8.960

GRAVY (calculated)

-0.739

Length

315 amino acids

Sequence
(BLAST)

001: MGSLCCVAAK SDRSNSPSHD FSFGPHEPYW RTNSSFSPPS SRWDLHGLTD GVSFYGSSTS SNANVLRSPD LSQTRHWTPS DFESATRRDQ TPKRFFLSKP
101: VHPILHPSDN AREITSDSAD ACSWSSGTPS SIDSTDVPEP LLDAQRVVAS STFKCGLCNR YISQKSPWGS RSIMRNRDMP VTGVLPCQHV FHAECLDQST
201: PKTHGNDPPC PVCTKQEGEH SNKSHNIGLR LKPLCEDGTS TRQWGCAQVG DCVESAVNVP PRNTMLMINR NRIRKNLSLR GNSSKDSPRK IKKSNSFALE
301: NQVSLVHSRG KQKAA

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.