Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54050 | Canola | plastid | 48.68 | 47.56 |
| CDY54049 | Canola | plastid | 45.79 | 44.62 |
| AT5G18260.1 | Thale cress | nucleus, plastid | 33.95 | 40.31 |
| CDY33767 | Canola | nucleus, plastid | 16.05 | 19.37 |
| CDY49106 | Canola | plastid | 16.32 | 18.29 |
| CDX81616 | Canola | nucleus, plastid | 15.79 | 17.86 |
| CDX82036 | Canola | nucleus | 17.63 | 16.58 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 16.84 | 16.04 |
| CDX72716 | Canola | nucleus | 15.53 | 15.13 |
| CDY39030 | Canola | nucleus, plastid | 8.42 | 14.95 |
| CDX90314 | Canola | nucleus | 15.53 | 14.25 |
| CDY12123 | Canola | nucleus | 15.79 | 14.22 |
| CDX68130 | Canola | nucleus, plastid | 7.63 | 14.01 |
| CDY41965 | Canola | nucleus | 15.0 | 13.48 |
| CDY42611 | Canola | nucleus | 14.74 | 13.33 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 13.95 | 13.25 |
| CDY47525 | Canola | nucleus, plastid | 15.53 | 12.74 |
| CDY69665 | Canola | nucleus, plastid | 15.53 | 12.72 |
Protein Annotations
| EnsemblPlants:CDY38501 | EnsemblPlantsGene:GSBRNA2T00065951001 | Gene3D:3.30.40.10 | GO:A0A078HLJ0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF9 | PFscan:PS50089 | ProteinID:CDY38501 |
| ProteinID:CDY38501.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EEC219 | UniProt:A0A078HLJ0 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA10g16570DBnaA10g16570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLJ0]
Coordinates
chrLK032424:-:299581..301578
Molecular Weight (calculated)
41926.8 Da
IEP (calculated)
7.112
GRAVY (calculated)
-0.575
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSETAVTSS VPVLISRSHC IEKITLLFAL VSIVWSGRRG RDVLPSRQDE EALQWRTNLS FSPAVYTRDG LDQDTSDDES HRFGLYSSTS RRSETLESCF
101: QQSPRWASTS SASGGIEESV IPITNSSKPR CLDEEKHFDR ESAAISPSLS SLHSLSEPRA PLVTPSKQPL SSYPRVFCNP VSDCENPQFD HSLQASCTVS
201: PINRQGSQVE EASSNSSNST SSNDNTLLDV ERSNETQAAN QRLEPGSLTK ATQHRCGVCK KLLSQKSPWS SHKILRSGDM PAAGVFPCHH VYHVECLDKV
301: TPTSQTRDPS CPACSNTIGA IEHELIAPET LQQALRSLRR SHTALGSELL STDNQTRQLR RRHKWEKLSC CLNIIFPSSS
101: QQSPRWASTS SASGGIEESV IPITNSSKPR CLDEEKHFDR ESAAISPSLS SLHSLSEPRA PLVTPSKQPL SSYPRVFCNP VSDCENPQFD HSLQASCTVS
201: PINRQGSQVE EASSNSSNST SSNDNTLLDV ERSNETQAAN QRLEPGSLTK ATQHRCGVCK KLLSQKSPWS SHKILRSGDM PAAGVFPCHH VYHVECLDKV
301: TPTSQTRDPS CPACSNTIGA IEHELIAPET LQQALRSLRR SHTALGSELL STDNQTRQLR RRHKWEKLSC CLNIIFPSSS
001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FK45]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.