CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G39140.3	Thale cress	nucleus	84.83	83.45
CDY41965	Canola	nucleus	80.09	79.91
CDY42611	Canola	nucleus	78.2	78.57
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	70.85	74.75
CDX90314	Canola	nucleus	65.64	66.91
CDY13812	Canola	cytosol, nucleus, peroxisome	61.85	65.41
CDX72716	Canola	nucleus	54.98	59.49
CDX82036	Canola	nucleus	52.84	55.2
PGSC0003DMT400028504	Potato	cytosol, plastid	12.32	47.27
KRH60799	Soybean	nucleus, plastid	45.97	44.6
KRH51493	Soybean	nucleus	45.73	44.37
VIT_03s0038g04400.t01	Wine grape	nucleus	47.39	43.96
KRH27444	Soybean	nucleus, plastid	42.42	41.44
KRH20799	Soybean	nucleus	42.89	41.14
PGSC0003DMT400066093	Potato	nucleus	40.05	40.53
Solyc10g054030.1.1	Tomato	nucleus	39.34	39.9
PGSC0003DMT400089080	Potato	nucleus	41.94	39.6
Solyc01g109910.2.1	Tomato	nucleus	43.13	39.57
VIT_04s0079g00570.t01	Wine grape	cytosol	10.19	34.68
CDX68130	Canola	nucleus, plastid	16.11	32.85
CDY39030	Canola	nucleus, plastid	16.35	32.24
GSMUA_Achr6P08950_001	Banana	nucleus	30.81	30.88
CDY47525	Canola	nucleus, plastid	32.23	29.37
CDY69665	Canola	nucleus, plastid	32.23	29.31
GSMUA_Achr4P24550_001	Banana	nucleus	29.38	29.11
Os01t0261100-01	Rice	cytosol	29.15	28.54
VIT_04s0079g00560.t01	Wine grape	cytosol	10.43	28.39
EES00516	Sorghum	cytosol	28.67	27.88
HORVU3Hr1G036310.2	Barley	plastid	28.2	27.74
TraesCS3D01G183700.1	Wheat	cytosol	27.96	27.63
TraesCS3B01G208100.1	Wheat	cytosol	27.96	27.57
TraesCS3A01G176900.1	Wheat	cytosol	27.96	27.57
TraesCS3D01G183800.1	Wheat	plastid	27.73	27.34
HORVU3Hr1G036290.3	Barley	cytosol	27.25	26.81
TraesCS3B01G208200.1	Wheat	plastid	27.25	26.81
TraesCS3A01G176600.1	Wheat	plastid	27.25	26.81
Zm00001d008306_P012	Maize	cytosol	27.96	26.64
OQU86641	Sorghum	nucleus	26.07	25.7
Zm00001d040317_P005	Maize	cytosol	24.17	22.27
GSMUA_Achr10P...	Banana	nucleus	24.17	22.17
CDY33767	Canola	nucleus, plastid	14.22	19.05
CDY49106	Canola	plastid	15.17	18.88
CDX81616	Canola	nucleus, plastid	13.74	17.26
CDY54050	Canola	plastid	15.17	16.45
CDY54049	Canola	plastid	14.93	16.15
CDY38501	Canola	nucleus	14.22	15.79

Protein Annotations

EnsemblPlants:CDY12123	EnsemblPlantsGene:GSBRNA2T00061113001	Gene3D:3.30.40.10	GO:A0A078FJ34	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFscan:PS50089	ProteinID:CDY12123
ProteinID:CDY12123.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EDC9A9	UniProt:A0A078FJ34	MapMan:35.2

Description

BnaC03g60390DBnaC03g60390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ34]

Coordinates

chrLK032017:-:717583..719803

Molecular Weight (calculated)

46662.5 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.666

Length

422 amino acids

Sequence
(BLAST)

001: MGNACCVAPR DKMVLLPNAS SAAAERRHSP TWSFRWDTNH NRGRVAGEEA SLSWLSDGIS RNDVLSDFKS DFVSSQGSPL DSFRTQTLQK SPASDLSFPR
101: NSSMDTVFEQ KEKDSIESAA PSYPSPAQLS LSLASQPSSF PTSPLPSQIY YHPASSSTLN PTQRPRLSKQ VSDGQICGMN SLSRSSITQE RQGTPLRCDS
201: SESGPSEGWS LQAFSEMMSS SRSTEPLSYD NDRFGLERDM IGHHGNRMSN HQQQSCGACS RPLSEKSLWS SQKMFMTNEL SVSAILACGH VYHGECLEQM
301: TPEIDKFDPS CPICTLGEKK TAKLSEKALR VEMDLKARHN KRLRNRVLDS GFDCEDFVMF DDNHRVEAAA GKSPKLVSSS SAKSYSAKPF LARHFSFGST
401: KSTKENLPVK KKGFFWTKSS KI

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.