Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 64.52 | 17.58 |
| KRH27444 | Soybean | nucleus, plastid | 53.23 | 15.28 |
| KRH20799 | Soybean | nucleus | 52.42 | 14.77 |
| KRH51493 | Soybean | nucleus | 50.81 | 14.48 |
| KRH60799 | Soybean | nucleus, plastid | 48.39 | 13.79 |
| VIT_18s0001g13060.t01 | Wine grape | nucleus | 49.19 | 13.77 |
| PGSC0003DMT400089080 | Potato | nucleus | 43.55 | 12.08 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 38.71 | 12.03 |
| AT2G21500.2 | Thale cress | nucleus | 40.32 | 11.88 |
| CDX72716 | Canola | nucleus | 37.1 | 11.79 |
| Bra031193.1-P | Field mustard | nucleus | 38.71 | 11.65 |
| CDX82036 | Canola | nucleus | 37.9 | 11.63 |
| Solyc01g109910.2.1 | Tomato | nucleus | 42.74 | 11.52 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 35.48 | 11.0 |
| CDY41965 | Canola | nucleus | 37.1 | 10.87 |
| Bra033599.1-P | Field mustard | nucleus | 34.68 | 10.83 |
| EES00516 | Sorghum | cytosol | 37.9 | 10.83 |
| CDY42611 | Canola | nucleus | 36.29 | 10.71 |
| Bra011873.1-P | Field mustard | nucleus | 37.1 | 10.62 |
| Zm00001d008306_P012 | Maize | cytosol | 37.9 | 10.61 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 36.29 | 10.56 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 36.29 | 10.51 |
| HORVU3Hr1G036310.2 | Barley | plastid | 36.29 | 10.49 |
| TraesCS3B01G208200.1 | Wheat | plastid | 36.29 | 10.49 |
| Os01t0261100-01 | Rice | cytosol | 36.29 | 10.44 |
| PGSC0003DMT400066093 | Potato | nucleus | 34.68 | 10.31 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 35.48 | 10.3 |
| TraesCS3D01G183800.1 | Wheat | plastid | 35.48 | 10.28 |
| TraesCS3A01G176600.1 | Wheat | plastid | 35.48 | 10.26 |
| CDY12123 | Canola | nucleus | 34.68 | 10.19 |
| Bra010702.1-P | Field mustard | nucleus | 33.87 | 10.17 |
| CDX90314 | Canola | nucleus | 33.87 | 10.14 |
| Solyc10g054030.1.1 | Tomato | nucleus | 33.87 | 10.1 |
| AT4G39140.3 | Thale cress | nucleus | 34.68 | 10.02 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 34.68 | 10.02 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 33.87 | 9.81 |
| VIT_11s0118g00330.t01 | Wine grape | nucleus | 19.35 | 9.76 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 32.26 | 9.5 |
| Zm00001d040317_P005 | Maize | cytosol | 34.68 | 9.39 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 27.42 | 9.34 |
| OQU86641 | Sorghum | nucleus | 30.65 | 8.88 |
| GSMUA_Achr10P... | Banana | nucleus | 31.45 | 8.48 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 3.23 | 2.58 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_04s0079g00570 | EMBL:FN595753 | EnsemblPlants:VIT_04s0079g00570.t01 | EnsemblPlantsGene:VIT_04s0079g00570 | Gene3D:3.30.40.10 | InterPro:IPR013083 |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | ProteinID:CCB51121 | ProteinID:CCB51121.1 |
| SUPFAM:SSF57850 | UniParc:UPI0002108A80 | UniProt:F6HFW9 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4:+:11211853..11212227
Molecular Weight (calculated)
13914.8 Da
IEP (calculated)
7.463
GRAVY (calculated)
0.058
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSRRERWS FDSEYLGFNH DKITMSSSRI SASPFIDLQT CGVCAKLLTE RSSWGSQKII ASNELSVVAV SICGHVYHVE CLKMATTITS LTEQTQWHLE
101: PIDTILICMA ILPRPIFKAH ALQN
101: PIDTILICMA ILPRPIFKAH ALQN
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.