Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72716 | Canola | nucleus | 64.99 | 66.15 |
| AT4G39140.3 | Thale cress | nucleus | 56.68 | 52.45 |
| Bra010702.1-P | Field mustard | nucleus | 54.16 | 52.06 |
| Bra011873.1-P | Field mustard | nucleus | 55.92 | 51.27 |
| Bra031193.1-P | Field mustard | nucleus | 46.1 | 44.42 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 40.81 | 35.6 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 10.83 | 34.68 |
| KRH60799 | Soybean | nucleus, plastid | 36.27 | 33.1 |
| KRH51493 | Soybean | nucleus | 36.27 | 33.1 |
| KRH20799 | Soybean | nucleus | 34.76 | 31.36 |
| KRH27444 | Soybean | nucleus, plastid | 34.01 | 31.25 |
| PGSC0003DMT400089080 | Potato | nucleus | 34.26 | 30.43 |
| Bra003754.1-P | Field mustard | nucleus, plastid | 15.62 | 29.95 |
| Bra008196.1-P | Field mustard | cytosol | 17.88 | 29.83 |
| Solyc01g109910.2.1 | Tomato | nucleus | 34.51 | 29.78 |
| Solyc10g054030.1.1 | Tomato | nucleus | 30.23 | 28.85 |
| PGSC0003DMT400066093 | Potato | nucleus | 29.97 | 28.54 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 28.21 | 26.6 |
| Os01t0261100-01 | Rice | cytosol | 27.46 | 25.29 |
| Bra015846.1-P | Field mustard | nucleus | 30.98 | 24.85 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 26.7 | 24.82 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 26.7 | 24.77 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 26.7 | 24.77 |
| EES00516 | Sorghum | cytosol | 26.95 | 24.65 |
| HORVU3Hr1G036310.2 | Barley | plastid | 26.45 | 24.48 |
| TraesCS3D01G183800.1 | Wheat | plastid | 26.2 | 24.3 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 26.2 | 24.24 |
| TraesCS3A01G176600.1 | Wheat | plastid | 25.94 | 24.01 |
| TraesCS3B01G208200.1 | Wheat | plastid | 25.94 | 24.01 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 25.69 | 23.94 |
| OQU86641 | Sorghum | nucleus | 25.44 | 23.6 |
| Zm00001d008306_P012 | Maize | cytosol | 25.94 | 23.25 |
| Zm00001d040317_P005 | Maize | cytosol | 22.42 | 19.43 |
| Bra026851.1-P | Field mustard | nucleus, plastid | 15.37 | 19.37 |
| GSMUA_Achr10P... | Banana | nucleus | 22.42 | 19.35 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 5.29 | 19.09 |
| Bra019673.1-P | Field mustard | nucleus, plastid | 15.37 | 17.99 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 5.54 | 14.19 |
| Bra002147.1-P | Field mustard | nucleus | 13.6 | 14.06 |
Protein Annotations
| EnsemblPlants:Bra033599.1 | EnsemblPlants:Bra033599.1-P | EnsemblPlantsGene:Bra033599 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI000253F8E6 | UniProt:M4EXR2 | MapMan:35.2 | : | : |
Description
AT4G39140 (E=7e-145) | protein binding / zinc ion binding
Coordinates
chrA06:+:26051293..26052765
Molecular Weight (calculated)
43784.0 Da
IEP (calculated)
8.363
GRAVY (calculated)
-0.705
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAP DKMVLSAAET ERRHSPPWSF RWDNHNHNHN HNRGGGRVAG EDSSLSRLDS LQTQSLLKSP PSDLSFPVNN HSMDTVLEQK ENDSTAPTQP
101: SPDAQLSSPP SSFPASRLPS QSYLHPASSS TLQLTQRPRL LKQLSDGQNY GINSLSRSSP TEERQGASFR YDSSRSGPSE GWSRQAFSEI MSSSRCNQPL
201: SNDNDCFGLE RDKIAELGNR MSNHQQQTCA ACARPLSEKS LWSRQNIFMT NELSVSAVLA CGHVYHGDCL EQMTPEVDKF DPSCPICTLG EKKTAMLSEK
301: ALNVEMNLKA KRLRNRVLDG DFDCDDFVMF DHSHMASAAA AAAKSPKLVS SSSVKSYSAK PFLARHFSFG SRGNSKSTKE DLPVRKKGFF WTKSSKI
101: SPDAQLSSPP SSFPASRLPS QSYLHPASSS TLQLTQRPRL LKQLSDGQNY GINSLSRSSP TEERQGASFR YDSSRSGPSE GWSRQAFSEI MSSSRCNQPL
201: SNDNDCFGLE RDKIAELGNR MSNHQQQTCA ACARPLSEKS LWSRQNIFMT NELSVSAVLA CGHVYHGDCL EQMTPEVDKF DPSCPICTLG EKKTAMLSEK
301: ALNVEMNLKA KRLRNRVLDG DFDCDDFVMF DHSHMASAAA AAAKSPKLVS SSSVKSYSAK PFLARHFSFG SRGNSKSTKE DLPVRKKGFF WTKSSKI
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.